Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2654g00024 ATGGAACCTGTTGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTCGCAGAATGTTTGGCATTGAGGATCATGAGCATGATTTCACCCAGGAATTTCCTCTTCTGCTTGGTGGGGGAGATGAACTGAACATTGTAACACAGCATGCCAATTTTTGTGCTGCTCCTGAAGCTGTTGAAAACGAGCTGATGTTTTATTCTTTAGATGCTCACAACAACTCAAATTCTTCGCAGTATATTTCTCAGGAAAGTAGCTATAGTAATAGTAGCAATTGTAGTGGTGATGACACTGTCTTCATTGCCAATCCGGGTAGCTCAAACTATTATTTTTGTTACCCTGATCATATGTTAGCAGATAATGCATGTGTATATTCCTTGGATGAGAAACATTTTGCCCCTTTTGCTCCATCTCTTGCTAACATAGCAACCCAGGAGAGTGTGAAGCTGTGTGAAGATTTGGCAAGTAACAGATTGGAGAATTTCGAATGCAATCAAATTGGACCTGTTGTTTTTCCTTCCAAGAGGAGGCTTGATGTTCCTGCTGAAGGTAAAATCAACAACAGATCAGAGAATCACAAGAAAAAAGCTCGTGTTTTAGAAGATGTGCAAGGATGTATGAAGAACAGCACATGGTCCAAGAAGAATCAGAAACATGACAGCAATAGGGAAGATGCAGAAGAGACTATTGCAGGATCAGATGGACAAAGCTCTAGTAGTAACATGTCAGAGGATGATAACAAGGAAAATATTGGAGGAGCTACTTCAGAATCTAAATCTGTTCTCAACTCAAATGGCAAAACAAGAGCAAGTAGGGGATCAGCAACAGATCCCCAGAGCCTGTATGCAAGGAAAAGAAGAGAGAGAATAAATGAACGATTAAGAATCCTACAGAATCTTGTCCCCAATGGAACCAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTGAATTATGTGAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATCTATGGATGTATGCTCCACTTGCTTATAATGGGCTTGACATTGGAATCAATTTGAACATGAAGAACTCCCTACCACTCTGA 1077 0.4039 MEPVGAFPDGEWDCFRRMFGIEDHEHDFTQEFPLLLGGGDELNIVTQHANFCAAPEAVENELMFYSLDAHNNSNSSQYISQESSYSNSSNCSGDDTVFIANPGSSNYYFCYPDHMLADNACVYSLDEKHFAPFAPSLANIATQESVKLCEDLASNRLENFECNQIGPVVFPSKRRLDVPAEGKINNRSENHKKKARVLEDVQGCMKNSTWSKKNQKHDSNREDAEETIAGSDGQSSSSNMSEDDNKENIGGATSESKSVLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGINLNMKNSLPL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2654g00024 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983
Vium2654g00024 358 Gene3D - 271 329 IPR036638 GO:0046983
Vium2654g00024 358 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 80 344 - -
Vium2654g00024 358 FunFam Basic helix-loop-helix transcription factor 273 330 - -
Vium2654g00024 358 CDD bHLH_AtIND_like 273 335 - -
Vium2654g00024 358 MobiDBLite consensus disorder prediction 211 228 - -
Vium2654g00024 358 Pfam Helix-loop-helix DNA-binding domain 282 322 IPR011598 GO:0046983
Vium2654g00024 358 MobiDBLite consensus disorder prediction 229 276 - -
Vium2654g00024 358 MobiDBLite consensus disorder prediction 206 283 - -
Vium2654g00024 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 336 IPR036638 GO:0046983
Vium2654g00024 358 SMART finulus 278 327 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2654g00024 Vium-Chr2654 181768 184043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2654g00024 250 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 83.654 6.18e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2654g00024 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2654g00024 - - gmx:100797500 496.508