Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2654g00023 ATGGCTCTCCAAGCTCTCAACTCACCCACAGCAACCACTCCGTCTTTCCCTTTTCACGACTCAACCATCCCATGGGCAAAACGCAAGCGCTCCAAGCGTTCCCGCGACCACCCTTCCGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGTGGCGGCGCCGCCACCTCCACCGATCCCACACCAACCCACCGCCACATCACCGCTTCACCACCGCCACAACTACCCACCCCAGATCCTTCCTCCAAGCTCACCTACAAATGCTCTGTTTGTGACAAAACCTTTCCCTCTTACCAAGCTCTCGGAGGACACAAGGCCAGCCACCGTAAACTCGCCTTGCCCGACGACCAGCCCACCTCCTCTGGCATCACCGCCACCAGCACCGTCATTACCGCCGGAGGCGGTCGTGCCCACGAGTGCTCCATCTGCCACAAGTCCTTCCCCACCGGACAGGCTCTCGGTGGACACAAACGTTGTCACTACGAAGGTAATAACGGTAACGGAAACAGTGTGGTAACCGCCTCTGTGGGGTCCACTCACACCGTGAGTCACGGCCACCACCCCCACCACCGTGATTTTGATCTCAATATCCCGGCTTTTCCCGAATTTTCAACGAAGGTAGGAGAAGACGAGGTCGAGAGCCCTCACCCTGTGATGAAGAAGCAGCGTCTCTTTGTGATTCCCAAAATTGAAATCCCTCAATTTCAGTAA 717 0.5676 MALQALNSPTATTPSFPFHDSTIPWAKRKRSKRSRDHPSEEEYLALCLIMLARGGAATSTDPTPTHRHITASPPPQLPTPDPSSKLTYKCSVCDKTFPSYQALGGHKASHRKLALPDDQPTSSGITATSTVITAGGGRAHECSICHKSFPTGQALGGHKRCHYEGNNGNGNSVVTASVGSTHTVSHGHHPHHRDFDLNIPAFPEFSTKVGEDEVESPHPVMKKQRLFVIPKIEIPQFQ 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2654g00023 238 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Vium2654g00023 238 SUPERFAMILY beta-beta-alpha zinc fingers 87 162 IPR036236 -
Vium2654g00023 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Vium2654g00023 238 SMART c2h2final6 88 110 IPR013087 -
Vium2654g00023 238 SMART c2h2final6 140 162 IPR013087 -
Vium2654g00023 238 MobiDBLite consensus disorder prediction 1 38 - -
Vium2654g00023 238 MobiDBLite consensus disorder prediction 56 84 - -
Vium2654g00023 238 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Vium2654g00023 238 Gene3D Classic Zinc Finger 86 162 - -
Vium2654g00023 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
Vium2654g00023 238 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 29 203 IPR044653 GO:0003700
Vium2654g00023 238 MobiDBLite consensus disorder prediction 1 19 - -
Vium2654g00023 238 Pfam C2H2-type zinc finger 139 163 - -
Vium2654g00023 238 Pfam C2H2-type zinc finger 88 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2654g00023 Vium-Chr2654 172063 173066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2654g00023 1 234 C2H2 Transcription Factor Family AT1G27730 48.819 2.03e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2654g00023 zf-C2H2_6 9.2e-13 CL0361