Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2654g00022 ATGAGTTGCAACGGTTGTCGAGTGCTGCGAAAAGGTTGCAGTGAAACATGTCCTTTGAGGTCGTGTCTGCAGTGGATCGAATCCGCTGAATCGCAAAGACATGCCACTCTTTTCCTTGCTAAGTTCTTCGGCCGCACCGATTTAATGTCCTTCATTGCTTCTGTTCCCCAAACCAGAAGACCTGCATTGTTTCAGTCTCTGCTGTTTGAAGGGTGCGGGAGAACGGTAAATCCGGTGAACGGCGCCGTGGGACTTCTGTGCAGCGGAAACTGGCACCTGTGTGAGGCCGCTGTGGAGACCGTGCTCGCCGGAGGCGTTCTTCGAGCGCAGCCGGATGCAGTGGCTGGAGCTTCCACTGGTATACGCCGCCCTTTCCGGCCACTAAGATTGGAACATGATGCGAGGGAGATGAACGAGAACTCGTCAAGTTTGATGAACAGAGCAGAGGAACAGGAAACGGTGCGTTACGGTGGTCACAAGAAAAATCAGATCTTAAATTTGTTCATGTAA 510 0.5216 MSCNGCRVLRKGCSETCPLRSCLQWIESAESQRHATLFLAKFFGRTDLMSFIASVPQTRRPALFQSLLFEGCGRTVNPVNGAVGLLCSGNWHLCEAAVETVLAGGVLRAQPDAVAGASTGIRRPFRPLRLEHDAREMNENSSSLMNRAEEQETVRYGGHKKNQILNLFM 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2654g00022 169 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Vium2654g00022 169 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vium2654g00022 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2654g00022 Vium-Chr2654 161211 162886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2654g00022 1 121 AS2 family AT4G37540 75.207 1.08e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium2654g00022 LOB 1.8e-22 No_clan