Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2654g00021 ATGAGTTGCAACGGTTGTCGAGTGCTGCGAAAAGGTTGCAGTGAAACATGTCCTTTGAGGTCGTGTCTGCAGTGGATCGAATCCGCTGAATCGCAAAGACATGCCACTCTTTTCCTTGCTAAGTTCTTCGGCCGCACCGATTTAATGTCCTTCATTGCTTCTGTTCCCCAAACCAGAAGACCTGGGTGCGGGAGAACGGTAAATCCGGTGAACGGCGCCGTGGGACTTCTGTGCAGCGGAAACTGGCACCTGTGTGAGGCCGCTGTGGAGACCGTGCTCGCCGGAGGCGTTCTTCGAGCGCAGCCGGATGCAGTGGCTGGAGCTTCCACTGGTATACGCCGCCCTTTCCGGCCACTAAGATTGGAACATGATGCGAGGGAGATGAACGAGAACTCGTCAAGTTTGATGAACAGAGCAGAGGAACAGGAAACGGTGCGTTACGGTGGTCACAAGAAAAATCAGATCTTAAATTTGTTCATGTAA 483 0.528 MSCNGCRVLRKGCSETCPLRSCLQWIESAESQRHATLFLAKFFGRTDLMSFIASVPQTRRPGCGRTVNPVNGAVGLLCSGNWHLCEAAVETVLAGGVLRAQPDAVAGASTGIRRPFRPLRLEHDAREMNENSSSLMNRAEEQETVRYGGHKKNQILNLFM 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2654g00021 160 ProSiteProfiles LOB domain profile. 1 98 IPR004883 -
Vium2654g00021 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 132 - -
Vium2654g00021 160 Pfam Lateral organ boundaries (LOB) domain 2 92 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2654g00021 Vium-Chr2654 161211 162891 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2654g00021 1 112 AS2 family AT4G37540 67.769 3.93e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium2654g00021 LOB 2.1e-13 No_clan