Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2654g00004 ATGGCATCGCCCACAGAGAAGAACACCAACACCAACACCACGCGTCCCCAGAGCAAGGCGAAGAAGAGAGCCGCAGCTGCCATATGCCAGTTGCTCGGTAATGCCAAGAATAAGCGCGTCGTTTTGGGAGACCTCACGAATGTCTCAAGCGCCGTTGTCGTTTCGGAATCTCCGAAACGGAAAAAGGTTAAACTCAAGAATGTCGATGAAAGAAGCGACCCTCAACTCTGTGGCCCATACAGTTCTGACATATACCAGTACCTTTGCGCATTGGAGGTTGCTCCTCGTTTGAGACCGATCCCGGATTATGTTCAGAAGGTTCAGAACGACGTGGATGGTAACATGCGCGGTGTTCTGGTGGATTGGTTGATTGAGGTGGCAGAAGAGTATGGGCTGGTTTCGGATACGTTATACTTTTGTGTGGCTTATATAGATAGGTTTTTATCGTTGAAGGTACTGTCCAGACAGAGATTGCAGTTGCTTGGGGTTGCTGCAATGCTCGTTGCTTCGAAATATGAAGAGGTTAAGCCACCCGAGGTGGAGGACTTTTGTTACATTACGGATAATACATACTCTAAGGAAGAGGTTTTGAATATGGAAGCCGATATATTGACGGCGTTGAAATTTGAATTGGGTGCTCCTACCGTGGGGACATTCTTGAGGAGATTCTGTGGAGTTGGTCAAGAGGGTGTTGATACTTCTGCTCTCCAGTTTGAGTTCCTTAGCTGCTACCTTGCAGAACTCAGTTTGTTGGATTATTACTGTGTAAAGTTTTTACCATCTTTGGTGGCAGCATCTGTTGTATTCTTAGCAAGATTTATGCTAAGCACAAAGACACATCCCTGGAATTCGGCCCTCCACCAACTGACTACATATAAACCCGCTGACTTGAAGGAATGTATTCTAAAGTTACATGACTTGTACCTCAGAAGGAGGGGGCCTTCTTTGCAAGGTGTGAGAGAGAAATACAAACAACATAAGTTCAAATGTGTGGCAACAGCACCATCTCCTCCCGATATACCCCTGTCTTTTTTTGAGTTTTCAAGGGTAGATTCGTAG 1059 0.4589 MASPTEKNTNTNTTRPQSKAKKRAAAAICQLLGNAKNKRVVLGDLTNVSSAVVVSESPKRKKVKLKNVDERSDPQLCGPYSSDIYQYLCALEVAPRLRPIPDYVQKVQNDVDGNMRGVLVDWLIEVAEEYGLVSDTLYFCVAYIDRFLSLKVLSRQRLQLLGVAAMLVASKYEEVKPPEVEDFCYITDNTYSKEEVLNMEADILTALKFELGAPTVGTFLRRFCGVGQEGVDTSALQFEFLSCYLAELSLLDYYCVKFLPSLVAASVVFLARFMLSTKTHPWNSALHQLTTYKPADLKECILKLHDLYLRRRGPSLQGVREKYKQHKFKCVATAPSPPDIPLSFFEFSRVDS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2654g00004 352 Pfam Cyclin, N-terminal domain 83 211 IPR006671 -
Vium2654g00004 352 Pfam Cyclin, C-terminal domain 214 336 IPR004367 -
Vium2654g00004 352 MobiDBLite consensus disorder prediction 1 20 - -
Vium2654g00004 352 Gene3D - 97 212 - -
Vium2654g00004 352 ProSitePatterns Cyclins signature. 116 147 IPR006671 -
Vium2654g00004 352 SMART Cyclin_C_2 214 337 IPR004367 -
Vium2654g00004 352 FunFam Mitotic cyclin 6 99 199 - -
Vium2654g00004 352 Gene3D - 83 333 - -
Vium2654g00004 352 PIRSF Cyclin_A_B_D_E 1 342 IPR046965 GO:0016538|GO:0044772
Vium2654g00004 352 MobiDBLite consensus disorder prediction 1 19 - -
Vium2654g00004 352 PANTHER CYCLINS 50 330 IPR039361 -
Vium2654g00004 352 CDD CYCLIN_AtCycA-like_rpt2 214 328 - -
Vium2654g00004 352 FunFam Cyclin A1 201 333 - -
Vium2654g00004 352 SUPERFAMILY Cyclin-like 72 211 IPR036915 -
Vium2654g00004 352 SUPERFAMILY Cyclin-like 214 338 IPR036915 -
Vium2654g00004 352 SMART cyclin_7 121 205 IPR013763 -
Vium2654g00004 352 SMART cyclin_7 218 306 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2654g00004 Vium-Chr2654 20555 24082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2654g00004 10 346 Core Cell Cycle Gene Families AT1G47230 55.278 7.56e-142 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2654g00004 K06627 - gmx:100801988 533.872