Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2654g00003 ATGGCATCGCCCACAGAGAAGAACACCAACACCAACACCACGCGTCCCCAGAGCAAGGCGAAGAAGAGAGCCGCAGCTGCCATATGCCAGTTGCTCGGTAATGCCAAGAATAAGCGCGTCGTTTTGGGAGACCTCACGAATGTCTCAAGCGCCGTTGTCGTTTCGGAATCTCCGAAACGGAAAAAGGTTAAACTCAAGAATGTCGATGAAAGAAGCGACCCTCAACTCTGTGGCCCATACAGTTCTGACATATACCAGTACCTTTGCGCATTGGAGGTTGCTCCTCGTTTGAGACCGATCCCGGATTATGTTCAGAAGGTTCAGAACGACGTGGATGGTAACATGCGCGGTGTTCTGGTGGATTGGTTGATTGAGGTGGCAGAAGAGTATGGGCTGGTTTCGGATACGTTATACTTTTGTGTGGCTTATATAGATAGGTTTTTATCGTTGAAGGTACTGTCCAGACAGAGATTGCAGTTGCTTGGGGTTGCTGCAATGCTCGTTGCTTCGAAATATGAAGAGGTTAAGCCACCCGAGGTGGAGGACTTTTGTTACATTACGGATAATACATACTCTAAGGAAGAGGTTTTGAATATGGAAGCCGATATATTGACGGCGTTGAAATTTGAATTGGGTGCTCCTACCGTGGGGACATTCTTGAGGAGATTCTGTGGAGTTGGTCAAGAGGGTGTTGATACTTCTGCTCTCCAGTTTGAGTTCCTTAGCTGCTACCTTGCAGAACTCAGTTTGTTGGATTATTACTGTGTAAAGTTTTTACCATCTTTGGTGGCAGCATCTGTTGTATTCTTAGCAAGATTTATGCTAAGCACAAAGACACATCCCTGGAATTCGGCCCTCCACCAACTGACTACATATAAACCCGCTGACTTGAAGGAATGTATTCTAAAGTTACATGACTTGTACCTCAGAAGGAGGGGGCCTTCTTTGCAAGGTGTGAGAGAGAAATACAAACAACATAAGAAATATGCTGATTCGAGTTGCATTGGATGTTTTGGTACAGTTCAAATGTGTGGCAACAGCACCATCTCCTCCCGATATACCCCTGTCTTTTTTTGA 1077 0.4568 MASPTEKNTNTNTTRPQSKAKKRAAAAICQLLGNAKNKRVVLGDLTNVSSAVVVSESPKRKKVKLKNVDERSDPQLCGPYSSDIYQYLCALEVAPRLRPIPDYVQKVQNDVDGNMRGVLVDWLIEVAEEYGLVSDTLYFCVAYIDRFLSLKVLSRQRLQLLGVAAMLVASKYEEVKPPEVEDFCYITDNTYSKEEVLNMEADILTALKFELGAPTVGTFLRRFCGVGQEGVDTSALQFEFLSCYLAELSLLDYYCVKFLPSLVAASVVFLARFMLSTKTHPWNSALHQLTTYKPADLKECILKLHDLYLRRRGPSLQGVREKYKQHKKYADSSCIGCFGTVQMCGNSTISSRYTPVFF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2654g00003 358 Gene3D - 83 328 - -
Vium2654g00003 358 CDD CYCLIN_AtCycA-like_rpt2 214 327 - -
Vium2654g00003 358 MobiDBLite consensus disorder prediction 1 20 - -
Vium2654g00003 358 ProSitePatterns Cyclins signature. 116 147 IPR006671 -
Vium2654g00003 358 PANTHER CYCLINS 50 325 IPR039361 -
Vium2654g00003 358 FunFam Mitotic cyclin 6 99 199 - -
Vium2654g00003 358 FunFam Cyclin A1 201 333 - -
Vium2654g00003 358 SMART Cyclin_C_2 214 338 IPR004367 -
Vium2654g00003 358 MobiDBLite consensus disorder prediction 1 19 - -
Vium2654g00003 358 Pfam Cyclin, C-terminal domain 214 331 IPR004367 -
Vium2654g00003 358 SUPERFAMILY Cyclin-like 214 329 IPR036915 -
Vium2654g00003 358 Gene3D - 97 212 - -
Vium2654g00003 358 PIRSF Cyclin_A_B_D_E 1 335 IPR046965 GO:0016538|GO:0044772
Vium2654g00003 358 SUPERFAMILY Cyclin-like 72 211 IPR036915 -
Vium2654g00003 358 SMART cyclin_7 121 205 IPR013763 -
Vium2654g00003 358 SMART cyclin_7 218 306 IPR013763 -
Vium2654g00003 358 Pfam Cyclin, N-terminal domain 83 211 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2654g00003 Vium-Chr2654 20555 24084 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2654g00003 5 327 Core Cell Cycle Gene Families AT1G47210 54.571 4.41e-131 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2654g00003 K06627 - gmx:100791691 497.664