Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2654g00001 ATGGCAACAGCCTCAGAGAACAACACCAGCACCACGCGCCCTCAGCGCGAGGCCAAGAAGAGAGCCGCAGCTGCCATATGCCAAATGCAGGGAAACGCCAAGAAGAAGCGCGTCGTTTTGGGAGACCTCACTAATGTCTCAGACGCCGCCGCAGTTGCTGTTTCAGATACTCAACCACGGAAAAAAATCAAACTCCAGAAACCGGTGCCGACGGTTGCCACACCGGAGAAAGTCGAGGAGAGGAGTGACCCGCAACTTTGTGGGCCGTATGTTTCGGATATATACGAGTACCTTTGTGGAATGGAGGTTCTTCCTAGTAAGAGACCGTTGCCGGATTATATTCAGAAAGTTCAGAAGGACGTGAATGCTAACATGCGTGGGGTTCTGGTGGATTGGTTGGTTGAGGTTGCGGAAGAGTATAAATTGGTTTCAGACACGTTATATTTTTGCGTGGCTTATATAGATAGGTTTTTATCATTGAATGTATTGTCCAGACAGAGATTGCAGTTACTTGGGGTTGCTGCAATGCTTATCGCATCGAAATATGAAGAGATTAAACCACCTGAGGTGGAGGACTTTTGTTACATTACGGATAATACATACTCTAAGGAAGAGGTTGTGAATATGGAAGCCGAAATATTGAAAGCTTTGAGGTTTGAATTGGGTGGTCCAACAGTGAAGACATTCTTGAGGTGTGTTTTTCTTTGCTGGTTATATGATGTTGTTGCATTGGTTTATCTTGTTTTAGTTGTTTTATCTTGGCTTTTTGGTTCACTCTTTACTCTTTGTCGTGGTTGCAGGAGGTTCTGTAGAGTTGGTCAAGAGGGCATTGATACTTCTGATCTCCAGTTTGATTTCCTTAGCTGCTACCTTGCTGAGCTCAGTTTATTGGATTATAATTGTGTAAAGTTTGTGCCATCTTTGGTGGCAGCATCTGTTGTATTCTTAGCAAGATTTATGTTAAGATCAAAGACACATCCTTGGAATTCGGCACTCCATCAGCTCACTAGATATAAACCCGCTGACTTCAAGGAATGTGTTCTAAACATACATGATTTATACCTCAGTAGGAGGGGGCCTTCTTTGCAAGCTGTGAGAGAGAAATACAAACAGCATAAGTTCAAATGTGTGGCAACAACACCATCTCCTCCCGAGATACCCCTTTCTTTTTTTGAATTTTCAGGATCAGATTGTTAG 1197 0.4353 MATASENNTSTTRPQREAKKRAAAAICQMQGNAKKKRVVLGDLTNVSDAAAVAVSDTQPRKKIKLQKPVPTVATPEKVEERSDPQLCGPYVSDIYEYLCGMEVLPSKRPLPDYIQKVQKDVNANMRGVLVDWLVEVAEEYKLVSDTLYFCVAYIDRFLSLNVLSRQRLQLLGVAAMLIASKYEEIKPPEVEDFCYITDNTYSKEEVVNMEAEILKALRFELGGPTVKTFLRCVFLCWLYDVVALVYLVLVVLSWLFGSLFTLCRGCRRFCRVGQEGIDTSDLQFDFLSCYLAELSLLDYNCVKFVPSLVAASVVFLARFMLRSKTHPWNSALHQLTRYKPADFKECVLNIHDLYLSRRGPSLQAVREKYKQHKFKCVATTPSPPEIPLSFFEFSGSDC 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2654g00001 398 ProSitePatterns Cyclins signature. 126 157 IPR006671 -
Vium2654g00001 398 Pfam Cyclin, N-terminal domain 93 221 IPR006671 -
Vium2654g00001 398 MobiDBLite consensus disorder prediction 1 22 - -
Vium2654g00001 398 SUPERFAMILY Cyclin-like 277 386 IPR036915 -
Vium2654g00001 398 Pfam Cyclin, C-terminal domain 267 382 IPR004367 -
Vium2654g00001 398 Gene3D - 93 379 - -
Vium2654g00001 398 PIRSF Cyclin_A_B_D_E 1 241 IPR046965 GO:0016538|GO:0044772
Vium2654g00001 398 PIRSF Cyclin_A_B_D_E 247 388 IPR046965 GO:0016538|GO:0044772
Vium2654g00001 398 Gene3D - 109 222 - -
Vium2654g00001 398 SMART cyclin_7 267 352 IPR013763 -
Vium2654g00001 398 SMART cyclin_7 131 215 IPR013763 -
Vium2654g00001 398 FunFam Cyclin A1 261 379 - -
Vium2654g00001 398 CDD CYCLIN_AtCycA_like_rpt1 83 220 - -
Vium2654g00001 398 FunFam G2/mitotic-specific cyclin 109 222 - -
Vium2654g00001 398 PANTHER CYCLINS 54 377 IPR039361 -
Vium2654g00001 398 SUPERFAMILY Cyclin-like 82 221 IPR036915 -
Vium2654g00001 398 SMART Cyclin_C_2 224 383 IPR004367 -
Vium2654g00001 398 CDD CYCLIN_AtCycA-like_rpt2 267 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2654g00001 Vium-Chr2654 8634 12222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2654g00001 8 392 Core Cell Cycle Gene Families AT1G47230 54.271 5.31e-143 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2654g00001 K06627 - gmx:100801988 585.874