Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2653g00003 ATGATCAGGATAAATGTTGAAGTTATTTTTATGACAGAACAACTTGAAATTATTCGAGGGAAAGAGGTAGGGCAGTTGTTGCAGTGGGAAGATATTCAGAAAATGAAATACTCTTGGAATGTTGTATGTGAAGTCATGAGGTTGTCTCCACCAGTCAGTGGTGCTTATAGAGAAGCTATAAAGGATTTCACCTATGCTGATTATAACATCCCTAAAGGCTGGAAGTTGCATTGGAACACTAATTCATCACACAAGGATCCAACAATCTTCTCGGATCCAGAAACTTTTGATGCTTCAAGGTTTGAAGGAGCAGGGCCTACACCTTTTGCACATGTTCCATTTGGAGGTGGCCCCAGAATGTGTTTGGGCCAAGAATTTGCTAGACTAGAGATACTTGTGTTCATGCATAATATCGTGAAACGGTTCAAGTGGGAATTGGTGATTCCTGATGAAAAGTTGAAGTATGATCCCATGCTAGAACCAGTAAAGGGACTTGAAATTCGACTTCATCCTTCTAGTTCATAG 525 0.4019 MIRINVEVIFMTEQLEIIRGKEVGQLLQWEDIQKMKYSWNVVCEVMRLSPPVSGAYREAIKDFTYADYNIPKGWKLHWNTNSSHKDPTIFSDPETFDASRFEGAGPTPFAHVPFGGGPRMCLGQEFARLEILVFMHNIVKRFKWELVIPDEKLKYDPMLEPVKGLEIRLHPSSS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2653g00003 174 Pfam Cytochrome P450 13 150 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2653g00003 174 Gene3D Cytochrome P450 11 172 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2653g00003 174 SUPERFAMILY Cytochrome P450 13 171 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2653g00003 174 PRINTS B-class P450 signature 112 121 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2653g00003 174 PRINTS B-class P450 signature 85 100 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2653g00003 174 PRINTS B-class P450 signature 57 84 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2653g00003 174 PRINTS B-class P450 signature 40 51 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2653g00003 174 PRINTS B-class P450 signature 121 132 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2653g00003 174 PANTHER CYTOCHROME P450 26 14 157 - -
Vium2653g00003 174 PRINTS P450 superfamily signature 40 51 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2653g00003 174 PRINTS P450 superfamily signature 121 132 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2653g00003 174 PRINTS P450 superfamily signature 112 121 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2653g00003 174 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 114 123 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2653g00003 Vium-Chr2653 7084 8500 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2653g00003 27 165 Cytochrome P450 AT3G19270 39.568 3.91e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2653g00003 - K20667 vum:124831254 344.739