Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2653g00001 ATGTGTGTTCACTTAACTGTCCCAGAAATCTTACTTCCCATGCCATGGTCCATAAGAATGAAGATTGCATTTGGTGCAGCTAAGGGACTTGCATTTCTCCATGAAGCAGAGAAACCTGTCATCTATCGTGATTTCAAGACATCAAATATTTTATTGGACCAGGACTACAATGCAAAACTTTCTGATTTTGGCCTTGCCAAGGATGGACCAGTTGGAGACAAATCACATGTTTCTACTAGAGTAATGGGAACATATGGTTATGCAGCACCTGAATACATAATGACAGGTCATCTGACTCCTAGAAGTGATGTTTACAGTTATGGAGTTGTTCTGCTTGAACTTCTGACAGGAAGAAAATCTTTAGACAAGTTAAGACCTGCTAGAGAGCAGAATCTCACAGAATGGGCTGTTCCTTTGCTGAAGGAAAAGAAGAAATTTCTAAACATAATAGATCCAAGGTTGGATGGTGATTATCCGATTAAAGCAGTTCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACCGCAATCCAAAAGCAAGGCCTCTGATGAGAGATATTGTGGACTCATTGGAGCCTTTGCAGGCATACACAGAGGTTCCTGTTGGAAAAACAGTGACCATAATCAGTGAGGTTCCTGAATCTGATTTGAAAATGAAAGATGCAAAATGA 672 0.4033 MCVHLTVPEILLPMPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDQDYNAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYIMTGHLTPRSDVYSYGVVLLELLTGRKSLDKLRPAREQNLTEWAVPLLKEKKKFLNIIDPRLDGDYPIKAVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQAYTEVPVGKTVTIISEVPESDLKMKDAK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2653g00001 223 ProSiteProfiles Protein kinase domain profile. 1 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2653g00001 223 Gene3D Transferase(Phosphotransferase) domain 1 9 207 - -
Vium2653g00001 223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 40 52 IPR008271 GO:0004672|GO:0006468
Vium2653g00001 223 Pfam Protein kinase domain 21 189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2653g00001 223 SUPERFAMILY Protein kinase-like (PK-like) 12 194 IPR011009 -
Vium2653g00001 223 FunFam Serine/threonine-protein kinase PBS1 3 207 - -
Vium2653g00001 223 PANTHER OS01G0588500 PROTEIN-RELATED 11 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2653g00001 Vium-Chr2653 858 2574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2653g00001 12 191 Glycoside Hydrolase AT3G07070 59.116 6.77e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium2653g00001 Pkinase 1.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2653g00001 - - vum:124831253 451.055