Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2651g00001 ATGAGAGACATGAAAGATGCAGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGCTGCATAAGCAGAAGAGCAAGGTGGTTCTGTGCAGCTGATAATGCTTTTCTCTGCCATGGCTGCGACACTTTGGTTCATTCCGCCAACCAGTTAGCTAGCAGGCACGAAAGGGTTCGGCTTCAAACTGCATCCTCCAAGGTAACCACCACCACCACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCACAACAACAACAAACACTTTGCACTGCAACAACGTCTCAAAGAAGAAGTTCTCTTCAACAACAGCAGTGTTCTTCCCCTGGTTCCGGAGCTGGGAAGGGAAGAACAAGAACCTGTGGTTGTGGATAATGACGAGACGGAGGAACAGATGCTATGTCGCGTGCCCGTGTTCGACAATTATGATGTGAGAACAGATGACTTGGACAGTTTTTCCGACATGGATTTCGCGGAGTTTGCTGCTGATGTTGAAAACCTACTTGATAAAGAAGACGATGAAATAAGTGAGCGTGTGGGAGGGGGAGTTCAGGGTGCAATGGCGAAGGTTAAGGATGAAGAGGATGTTGATGGTGATGTAGCGTGTTATCTGGAGTCAGTTTTTGACATGACGAACGATGATGCCTTTCATTGGAATAGCATTGAGTCCGTGTTGTCAGATGCACGGGAAAAGGAGTGTGTGGTGGCGAGTGACGGTGCTGTTGGTGAAGAAGGAGGAACAAAGAGAGACATATTTTTGAGACTGAACTACGATGAGGTTATAACTGCATGGTCTAGCCAAGGTTCTTCTCCCTGGACAACTTCAAACCCACCTAAGTTCAACTCTGGCTATGACTTCTGCTTGGGTCTGAGTGGTGTAGATGGGGACGTAAGAGCCTTAAGGGGTGACCTAGACGGAGGAAGAGAGGCAAGAGTGTCGAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAAATAAGATATGAAGTGAGAAAGTTGAACGCAGAAAAAAGGCCCAGAATGAAAGGTCGTTTTGTGAAGAGAACATGCTTTGTGGGGGCGAATGCTTTTCCTGCTTACCAATGA 1107 0.4806 MRDMKDAGALGAKTARACDSCISRRARWFCAADNAFLCHGCDTLVHSANQLASRHERVRLQTASSKVTTTTTHAWHSGFTRKARTPRHNNNKHFALQQRLKEEVLFNNSSVLPLVPELGREEQEPVVVDNDETEEQMLCRVPVFDNYDVRTDDLDSFSDMDFAEFAADVENLLDKEDDEISERVGGGVQGAMAKVKDEEDVDGDVACYLESVFDMTNDDAFHWNSIESVLSDAREKECVVASDGAVGEEGGTKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSGYDFCLGLSGVDGDVRALRGDLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2651g00001 368 SMART bboxneu5 13 60 IPR000315 GO:0008270
Vium2651g00001 368 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Vium2651g00001 368 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515
Vium2651g00001 368 CDD Bbox1_BBX-like 17 60 - -
Vium2651g00001 368 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Vium2651g00001 368 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 356 - -
Vium2651g00001 368 Pfam CCT motif 313 355 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2651g00001 Vium-Chr2651 792 2785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2651g00001 7 355 C2C2-CO-like Transcription Factor Family AT1G25440 44.028 4.15e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vium2651g00001 zf-B_box 5.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2651g00001 - - vun:114176987 706.442