Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2645g00002 ATGAAAGGGAAGATCAGAGAATTTATAGATTCGGCATCCTCATCGGTGTTCTCAAACACAAACGCGCTTCAGCAGCGCCTCCAGTTCATTCTGCAGAACCGTCATGAGAGGTGGGTGTATGCCATATTCTGGCAAGCCACCAAAGACAGCGACTCCCGTCTCACACTGGAATATGGGGATGGCTTATTCATGGGCGGAAAGGGAAGAGAGGGAACGGAAGTCAGAATGTCGGAGGAGCAAACGAGGAACAACGTGAACGACATCGAATGGTTCTACAGGGTGTCGCAAACTCGATCGTATGCCGCCGGGGACGGTGTGGTGGGGTGTGCCTTCGGCTCGGGGGTGGATGTTTGGTTGAGCGGAGTAAAGCAGTTTGAAGTGAACGAGTGTGACGAGAGAGTGGGGGAAGCAAGGAGGCATGGGATCCAGACATTAGTGTGCGTGTCGGTGGCACGAGGGATCCTTGAACTGGGTTCGGATGAGGTTCTAAAGCTGGATTATGGGGTTCTGCAAATGGTGAAATCGGTGTTGGAGGAGCGGGAGAGTGGGAGTGAGAATCCGGTGAGCAAGCAGTGGGTGGTTCCCGGCAAGGAGGAAGAAACAGAGAGGAGAAGAGAGTTGGAGGGATCGTCGACGGACTCTTCAGGGCCTTCTGATCATGATGCAGAAGGCAACAACAACAATGTTCCCATGATGGGAAGAAGGGTGGGGAGGGTACGTGAGGCGCTTCCCGTAAATCACGTAGAGGCCGAGAGGCAGCGGCGAGAGAAGCTGAATCAGAGATTCTATGCTCTTCGCTCCGCTGTCCCAAACGTGTCCAAGATGGACAAGGCCTCCCTGCTTTCGGACGCCGTTGATTATATCAATGAACTGAAGGTCAAAATCGGCAGCCTCCAGGCTGCTTTCCAGGCCAAGCAGGAAGCTCCGGCAGAGCAGGTCCAACCCCAATCCATTCCCGCACCCTCCTCTGCAACTACTGACATGAGAGTGGAAGTTCAGATCTTGGGGTCCGAGGCCATGATAAGGGTCCAGAGCCTGAACGTTAACCACCCCTCTGCTCGGCTCATGGATGCTCTCAGGGACGTCAATTTGCAAGTTCTTCATGCCACAATCTCCAACATCAAAGAGATGATGCTGCAAGACGTCGTCGTCAGAGTTCCCCATGACCTCACCACCCAAGAGGCCCTCCAAACTGCTATTATGCACAGACTTTGA 1215 0.5366 MKGKIREFIDSASSSVFSNTNALQQRLQFILQNRHERWVYAIFWQATKDSDSRLTLEYGDGLFMGGKGREGTEVRMSEEQTRNNVNDIEWFYRVSQTRSYAAGDGVVGCAFGSGVDVWLSGVKQFEVNECDERVGEARRHGIQTLVCVSVARGILELGSDEVLKLDYGVLQMVKSVLEERESGSENPVSKQWVVPGKEEETERRRELEGSSTDSSGPSDHDAEGNNNNVPMMGRRVGRVREALPVNHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVDYINELKVKIGSLQAAFQAKQEAPAEQVQPQSIPAPSSATTDMRVEVQILGSEAMIRVQSLNVNHPSARLMDALRDVNLQVLHATISNIKEMMLQDVVVRVPHDLTTQEALQTAIMHRL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2645g00002 404 SMART finulus 248 297 IPR011598 GO:0046983
Vium2645g00002 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 313 IPR036638 GO:0046983
Vium2645g00002 404 Coils Coil 401 404 - -
Vium2645g00002 404 MobiDBLite consensus disorder prediction 178 231 - -
Vium2645g00002 404 Gene3D - 240 307 IPR036638 GO:0046983
Vium2645g00002 404 PANTHER MYC 15 403 IPR045084 GO:0003700|GO:0006355
Vium2645g00002 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 242 291 IPR011598 GO:0046983
Vium2645g00002 404 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 23 176 IPR025610 -
Vium2645g00002 404 Pfam Helix-loop-helix DNA-binding domain 246 291 IPR011598 GO:0046983
Vium2645g00002 404 MobiDBLite consensus disorder prediction 211 225 - -
Vium2645g00002 404 MobiDBLite consensus disorder prediction 195 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2645g00002 Vium-Chr2645 24041 25586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2645g00002 23 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.709 3.68e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2645g00002 bHLH-MYC_N 1.5e-31 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2645g00002 - K13422 pvu:PHAVU_004G090300g 654.055