Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2644g00003 ATGGAGTGGACTAGAGGCTTCATCATAGGACGTGGCTCGTCAGCCACCGTCTACACCGCCACCTCCGCCCACTCCTCCACCGTTGCCGCTGTCAAGACTGCAGAGTTATCCCCGTCAAACTCAGAAAAGTTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCCCAAGTAGTTGCCTACAAAGGTTGTAACACTACAGAGGAAAACAACACCCTGTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGAACTCTCTCTCAGGAAATTCGCCGGCACGGTGGTCGGCTCAGCGAGCCGACCATCGTGAACTACGTTCGACAAGTCCTGCAGGGGCTGGAGTACTTGCACAATAAGGGTGTTGTGCATTGTGATATTAAAGGTAGCAACATTTTGATTGGGGAAGATGGGGCCAAGATTGGGGATTTTGGGTGTGCTAAGTTGTGGAATGAGTCTCCGGTGGCGGCGATCGGGGGCACGCCAATGTTCATGGCCCCAGAGGTGGCGCGTGGGGAGGAGCAAGGGTACCCTGCTGATGTATGGGCGCTTGGATGCACTGTGGTTGAAATGGCCACTGGGTTTGCTCCGTGGCCTAATTTAGAAGACCCTGTAACTGTGTTGTACCGCGTTGCATATTCCAATGAAGTTCCTGAGATTCCAAGTTTTCTGTCTGAAGAAGCAAAGGATTTCTTGGGGAAGTGTTTCAGGAGGAATCCTAAAGAGAGGTGGAATTGTAGTGAGCTTCTGAAGCATCCGTTTGTTGGGGAATTGAGTTCCAACGACAAGGATATTGAACAATCTAATTCATGTTCTCCAACAAGTATTCTTGAGCAGAGCTTTTGGAATTCTGTGGAAGAGGCAGAGTGTGTCTCTGACCCTGGCAATGTGATTCAAATTAAAAGCTCTGATGAGTCTCCGAAGGGTAGTATCAGAAGGCTAGCTTTGTGTTCGGGGGATCCAATTTGGGAATTGGATGATGAAAATTGGATCACAACGAGGGGCAGTGAAGCAGGGGTTTCAAGTTGTGAAGGGTTGGATTTGGATGTTGTTAATATTAGAATTAGTGATTATTTTTGTGATGATTATTATAATTTTAGTGATGTTAGCGTTGAAGTTGGTAGTTTCAATTTTGAGGGAGGCGTTGATGAGATGGTTATCCCTTCAACATTTGAGTTTTTATAA 1188 0.4697 MEWTRGFIIGRGSSATVYTATSAHSSTVAAVKTAELSPSNSEKLQREQRILSSLFSPQVVAYKGCNTTEENNTLWFNLFMEYMPFGTLSQEIRRHGGRLSEPTIVNYVRQVLQGLEYLHNKGVVHCDIKGSNILIGEDGAKIGDFGCAKLWNESPVAAIGGTPMFMAPEVARGEEQGYPADVWALGCTVVEMATGFAPWPNLEDPVTVLYRVAYSNEVPEIPSFLSEEAKDFLGKCFRRNPKERWNCSELLKHPFVGELSSNDKDIEQSNSCSPTSILEQSFWNSVEEAECVSDPGNVIQIKSSDESPKGSIRRLALCSGDPIWELDDENWITTRGSEAGVSSCEGLDLDVVNIRISDYFCDDYYNFSDVSVEVGSFNFEGGVDEMVIPSTFEFL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2644g00003 395 Pfam Protein kinase domain 8 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2644g00003 395 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Vium2644g00003 395 Gene3D Transferase(Phosphotransferase) domain 1 2 306 - -
Vium2644g00003 395 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 290 - -
Vium2644g00003 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vium2644g00003 395 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2644g00003 395 CDD STKc_MAPKKK 2 256 - -
Vium2644g00003 395 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2644g00003 395 SUPERFAMILY Protein kinase-like (PK-like) 4 281 IPR011009 -
Vium2644g00003 395 FunFam Mitogen-activated protein kinase kinase kinase 17 2 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2644g00003 Vium-Chr2644 7977 9706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2644g00003 1 286 MAP Kinase Kinase Kinase AT2G32510 54.181 1.41e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium2644g00003 Pkinase 9.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2644g00003 K20716 - gmx:100797801 635.565