Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2639g00013 ATGGGAGTTCAAGAGAGAGACCCTCTGACACAGTTGAGTTTGCCTCCTGGGTTTAGGTTTTACCCCACTGATGAAGAGCTTCTGGTTCAATACCTTTGTCGAAAGGTTGCTGGGCATCATTTTTCTCTTCCAATCATTGCTGAAGTTGATTTGTACAAGTTTGATCCATGGGTTCTTCCAGCTAAGGCTGTGTTTGGAGAAAAAGAATGGTATTTCTTTAGTCCGAGGGATAGGAAGTATCCGAATGGTTCACGGCCAAACAGAGTTGCGGGTTCTGGATATTGGAAAGCCACGGGAACTGATAAGATTATCACCACCGAAGGGAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTACGTTGGAAAAGCTCCCAAAGGCTCCAAAACCAATTGGATCATGCACGAGTATCGTGTTCTTGACTCTTCGCGCAAAAACAACCTCGGAACCACCAAGCTTGATGATTGGGTTTTGTGTCGTATATACAAGAAGAACTCGAGTTCGCAAAAGGTTGAGACCAACCTTTGGGGCAAAGAATGCAGCAATGGGTCATCACCTTCTTCATCTTCCCACGTGGAAGACATGGTCGAATCGTTTCTGGAGATCGATGATAAGTGCTTCAATTTTCCGGGTGTGAACTCGCTCAAAACAATGCAACAACAGGACGAGAAATTCGGGTTTCAAAACATGAGATCCGGATTTTTTTCTGATTGGGTCACCCCACCGGATCTTGATTCGATTTCCGAATTCGGGTCAGGTTGCCTAACCCAAGAGATGGTGAATTATGAGTTCAATGACTTATTTGTCCCTTCTGTGCCGCCATTCGGCCACGTGGAGTTCATGTCAGGGGCACCCACGGAGGAGGAAGTTCAAAGCTGTGTGAGAACCCAACGGGCTGACGGAGCGGGATATTTTCAGCAGAACCCGAATGCCCGAAATTTGTCCGGTTCCAACGAAACGTTTGGGTTGGGGTTCACGGATCAGCAAATCAGGTTCGGGTTACGGAACTAG 1011 0.4649 MGVQERDPLTQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEVDLYKFDPWVLPAKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRVLDSSRKNNLGTTKLDDWVLCRIYKKNSSSQKVETNLWGKECSNGSSPSSSSHVEDMVESFLEIDDKCFNFPGVNSLKTMQQQDEKFGFQNMRSGFFSDWVTPPDLDSISEFGSGCLTQEMVNYEFNDLFVPSVPPFGHVEFMSGAPTEEEVQSCVRTQRADGAGYFQQNPNARNLSGSNETFGLGFTDQQIRFGLRN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2639g00013 336 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Vium2639g00013 336 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Vium2639g00013 336 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Vium2639g00013 336 FunFam NAC domain-containing protein 72-like 23 169 - -
Vium2639g00013 336 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 201 - -
Vium2639g00013 336 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2639g00013 Vium-Chr2639 185638 187526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2639g00013 1 240 NAC Transcription Factor Family AT1G52890 67.871 3.50e-113 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium2639g00013 NAM 4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2639g00013 - - gmx:100811301 574.704