Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2639g00012 ATGAAGCAGGAGATGGAGAACATAGAGTCTCAAACTTCCTACATAACAACATTACAAGGCCAAGCACCTGACATCTCTTGCAAGGGGAATCCCTCCGTAACTCTAAAGGTTTTGAGATTTGGAAGTAGGATTTATCTTCATGCATTGATTGGAATAAAAAATTTCTTCCGAGATGTTACTTATAAAATTAAGACCAGAAAGGGGGGATTTCTGAAGAGCAAAATGGAAGAGAAAGTAGTTCTGAATGGAGTGGCAGGCATGGTTCAACCTGGTGAAATTCTTGCCATGTTAGGTCCTTCTGGGAGTGGCAAAACTACTTTGCTAGCAGCATTGGGAGGCAAGCTTGGTGGGAAACTCTATGGAAGCATAACATATAATGGCAAAGCGTTCTCAAATGCAATGAAGAGGAAAACAGGTTTTGTGACACAAGATGATGTTCTCTATCCCCACTTGACTGTGACTGAAACTCTGGTGTTCACAGCCTTTCTCAGATTGCCAAGCAGTTTATCCAAAAAGGAGAAAATTGAGCATGCAAAAGCTGTGATGGCTCAACTTGGTTTAACCAAGTGCAAGGACAGCATCATTGGAAGCCCACTTCTTAGAGGTGTTTCTGGTGGGGAGAAAAAAAGGGTTAGTATTGGACAAGAAATGCTCATAAACCCAAGCTTGCTATTTCTGGATGAGCCAACCTCTGGCCTAGACTCAACAACAGCTCAAAGAATTGTCTCAATTTTATGGGAACTAGCAAATGGAGGAAGAACCGTTGTGATGACCATACATCAACCTTCAAGTAGGATTTACTGCATGTTTCACAGGGTGTTACTGCTTTCAGAAGGGAACTTACTATATTATGGAAATGGGTCTGAAGCTATGGAATATTTTACTAATATTGGATTTGCCCCTACCATGCCATTGAACCCCTCAGATTTCCTTTTGGATCTTGCAAATGGTATCTACACTGGTCAATCGAATGAGGACCATGCCTTAAATAAGACCAAATTGATTTCTGCATATAGGAACTACTTTGATGTCAAATTTAAGCCAGTGATACAAGAAATTCCAGACTACGATAAAACTCAGGGTAGATTTGAAGGCAATAAATTTGGGGAATGGCCTACCAGTTGGTCAAATCAGTTTCTTGTACTGCTAAAAAGAGATGTCAAAGAGAGAAAACATGCATCATTTTCTGGCCTGATGGTTTGTCAGATTCTTGTGGCTGCTCTTATTACAGGGTTACTATGGTATAAATGTGATATTTCACGCTTGCAGGATCAGATTGGACTTCTATTCTTCCTTACTAGCTTTTGGGGTACCATGCCTCTTTATCAAGCAATATTCACCTTCCCCCAAGAGGTAATGATGCTGGAGAAGGAACGATCCTCTGGAATGTACAAGCTCTCTTCATACTTCATTTCAAGGATGGTTGGTGACCTTCCAATGGAGCTCGTGCTTCCTTCAATATTCATCACCATAATCTATTGGCTGGTAGGGTTGAAAAACAATGTGGTAAATTTCCTATGCACACTTGTCACTATTGTACTCCATGTGTTGGTTTCACAAGGACTAGGCCTTGCCATTGGTGCTGTTGTAATGGACCAGAAATCCGCAACCACACTGGCCTCATTGATTGTGCTAACTTCTGTTTTGGTTAGTGGATACTATATTCAACATGTGCCAAAATTTGTATCATGGCTCAAGTACTTCTCCATTAACTACTACATATACCATCTCCTGATGGGGTCTCAATATGGCTCAAGTGACACATACCCATGTTCTCACGGAAAGTGTTTGGTTGCAGAATATCCTTTGATAGAACAAATGGCGTTACATTTTCAAGGGAAAATCATGGCTGCATCGGCTCTATTCATAATGCTTATAGGATACAGATTAGTGGCTTATTTGGCTCTCATGAAAATTGGGATAACAAAGAAAATGCGATAG 1941 0.4065 MKQEMENIESQTSYITTLQGQAPDISCKGNPSVTLKVLRFGSRIYLHALIGIKNFFRDVTYKIKTRKGGFLKSKMEEKVVLNGVAGMVQPGEILAMLGPSGSGKTTLLAALGGKLGGKLYGSITYNGKAFSNAMKRKTGFVTQDDVLYPHLTVTETLVFTAFLRLPSSLSKKEKIEHAKAVMAQLGLTKCKDSIIGSPLLRGVSGGEKKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSILWELANGGRTVVMTIHQPSSRIYCMFHRVLLLSEGNLLYYGNGSEAMEYFTNIGFAPTMPLNPSDFLLDLANGIYTGQSNEDHALNKTKLISAYRNYFDVKFKPVIQEIPDYDKTQGRFEGNKFGEWPTSWSNQFLVLLKRDVKERKHASFSGLMVCQILVAALITGLLWYKCDISRLQDQIGLLFFLTSFWGTMPLYQAIFTFPQEVMMLEKERSSGMYKLSSYFISRMVGDLPMELVLPSIFITIIYWLVGLKNNVVNFLCTLVTIVLHVLVSQGLGLAIGAVVMDQKSATTLASLIVLTSVLVSGYYIQHVPKFVSWLKYFSINYYIYHLLMGSQYGSSDTYPCSHGKCLVAEYPLIEQMALHFQGKIMAASALFIMLIGYRLVAYLALMKIGITKKMR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2639g00012 646 Pfam ABC-2 type transporter 260 343 IPR043926 GO:0140359
Vium2639g00012 646 FunFam ABC transporter G family member 22 70 297 - -
Vium2639g00012 646 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 55 633 - -
Vium2639g00012 646 Pfam ABC-2 type transporter 378 583 IPR013525 GO:0016020|GO:0140359
Vium2639g00012 646 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 303 IPR003439 GO:0005524
Vium2639g00012 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 295 IPR027417 -
Vium2639g00012 646 Gene3D - 69 297 IPR027417 -
Vium2639g00012 646 Pfam ABC transporter 81 231 IPR003439 GO:0005524
Vium2639g00012 646 ProSitePatterns ABC transporters family signature. 203 217 IPR017871 GO:0005524|GO:0016887
Vium2639g00012 646 SMART AAA_5 90 280 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2639g00012 Vium-Chr2639 170077 173530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2639g00012 88 288 Calmodulin-binding Proteins AT2G36910 24.155 9.28e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2639g00012 K05681 - gmx:100812397 951.814