LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2639g00002	ATGGCTGACATAGCGGGTCTGGTTGAGGCTGCAGGGGCAAGATTTGGCTCATTGGAGCTTATTGGGCAAGGGTCATTCGGCGACGTGTATAAAGGGTTTGACAAGGAGCTAAACAAGGAAGTTGCTATCAAAATGATTGATTTGGAAGAATCAGAGGATGAAATAGAAGACATTCAGAAGGAAATTTCTGTTCTGTCACAATGTCGATCTGCGTACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACCAAACTTTGGATAATAATGGAATACATGGCTGGAGGCTCTGTTGCTGATCTACTGCAATCAGGTCCCCCACTTGATGAAATGTCAATTGCTTGCATTCTACGTGATTTACTTCATGCAATTGATTACCTACATACTGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTAACTGAGAATGGTGATGTAAAGGTTGCCGATTTTGGTGTTTCTGCACAGTTAACAAGAACCATATCAAGGAGAAAGACTTTTGTAGGAACACCATTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAAAAGGCAGATATCTGGTCTTTGGGGATTACTGCAATAGAGATGGCAAAAGGGGAGCCTCCACTTGCAGATCTTCATCCAATGAGAGTGCTTTTCATCATACCGCGAGAGAATCCACCACAACTAGATGAACACTTTTCTCGCTATATGAAAGAATTTGTGTCATTGTGCTTGAAAAAGGTTCCTGCTGAGAGACCTAGTGCTAAAGAGCTTCTCAGACATCGTTTCATTCGGAATGCCAGGAAGAGTCCTAAGCTATTGGAGAGAATAAGGGAGCGTCCAAAGTTCCAAATAAAGGAAGATGAGGCACCACCTAGAAATGTCCCAAGGGGGATGGGGGAGGCATATGATACTGTTAAGGCTGCAAAAGATTTAACGGGTGATGAGACTAATCAGCCTAGTGGCCAAGGTAAAACCCTGAAAAGTTCTGGGTGGGACTTCAGCATTAGTGGATCTCAGGGTACTGGAACCTTTCGTAGTGTGTCCCGACCACCTCAATTTAGAGATAAGAAAACTGAAGTTTCAAATCATCAGCTTACCCAAAACAAAAGTCCAGAGAGTGGCAATCAGGTGGGATCTGGCAATAAAAATGAGTTGCTAGAGGCTTCTTTTGGAAAAGATTCAGGAATTCCCTACCATGATGAACATCTGGATAATCATCTTGAAGATCAGGATGAGTTGTTCGGGAATGGATTGGGAACTGTTGTTGTTCGGTCTCCAAAAGCACCACAGTCATCACTGTTTCGTGACCAAAATTCCCGTTCTAGCAGCAGCTATGCTTCTTTTGAAGACGTTTCTACTAGCGGAACTGTGGTTTTGCGTAATCAGCACGATGATTCTGATTCTCCACAGACACCAAGGTCCCGATTGGGACTTAATAACAGAAATTCTAATGCCTCATTTGAAGATAGTGCTACAAATCTGGCTGAGGCAAAGGCTGCTATCCAAGGTGGATTGAAGAAAATGAATGTCCGAGATAGATTTGCGCTGGGGAAACTCAACAATGATGTACAAGAAAGCAGGAGAGATCAAATGTCAACCAGCTCTGATTCTTCCAGACCATCTCGTGAATACATTGATGCACAAAAGGGGATTTCAAGATCACAGTATGATATTGATGATGAAGAAAGTGCGAAAATAATCTCATCCTCTACGCCGTTATCTGTTTTGCTTATTCCTTCATTGAAAGAGGCCATTGCTGAGGATCCAGAAGGGCCAATTGCACAAATTGTTATCAATGCTCTTTTAAACATGGAGAGGACAAAGCCCCAATCCTGTGATGCTCTTGTCAAAAACTTGCTTCAGCGGTTGGCAAGTTCAAAGGAATTATCATTGAAGGACCTGCAAGAACTGGCTGGCCGATTACTTAGTAAGACTAACTCAGCTGAAGAAGCCCGAAATGCAGAGACGGATCTCAAGAAGAAACAAAACAGGGAAATTCATTCAAATAGCAATTTAAGTCCCCTCGCAAGATTTCTTCTCTCAAGATGGCAAGGCCAAGCCTCACGGGATCTAAATGCATCTTGA	2097	0.422	MADIAGLVEAAGARFGSLELIGQGSFGDVYKGFDKELNKEVAIKMIDLEESEDEIEDIQKEISVLSQCRSAYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHTEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRYMKEFVSLCLKKVPAERPSAKELLRHRFIRNARKSPKLLERIRERPKFQIKEDEAPPRNVPRGMGEAYDTVKAAKDLTGDETNQPSGQGKTLKSSGWDFSISGSQGTGTFRSVSRPPQFRDKKTEVSNHQLTQNKSPESGNQVGSGNKNELLEASFGKDSGIPYHDEHLDNHLEDQDELFGNGLGTVVVRSPKAPQSSLFRDQNSRSSSSYASFEDVSTSGTVVLRNQHDDSDSPQTPRSRLGLNNRNSNASFEDSATNLAEAKAAIQGGLKKMNVRDRFALGKLNNDVQESRRDQMSTSSDSSRPSREYIDAQKGISRSQYDIDDEESAKIISSSTPLSVLLIPSLKEAIAEDPEGPIAQIVINALLNMERTKPQSCDALVKNLLQRLASSKELSLKDLQELAGRLLSKTNSAEEARNAETDLKKKQNREIHSNSNLSPLARFLLSRWQGQASRDLNAS	698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2639g00002	698	Gene3D	Transferase(Phosphotransferase) domain 1	13	298	-	-
	Vium2639g00002	698	SUPERFAMILY	Protein kinase-like (PK-like)	14	295	IPR011009	-
	Vium2639g00002	698	FunFam	serine/threonine-protein kinase dst1 isoform X1	12	299	-	-
	Vium2639g00002	698	MobiDBLite	consensus disorder prediction	523	547	-	-
	Vium2639g00002	698	Coils	Coil	648	668	-	-
	Vium2639g00002	698	MobiDBLite	consensus disorder prediction	367	386	-	-
	Vium2639g00002	698	MobiDBLite	consensus disorder prediction	432	493	-	-
	Vium2639g00002	698	ProSiteProfiles	Protein kinase domain profile.	15	267	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2639g00002	698	MobiDBLite	consensus disorder prediction	315	352	-	-
	Vium2639g00002	698	PANTHER	STERILE20-LIKE KINASE, ISOFORM B-RELATED	13	642	-	-
	Vium2639g00002	698	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Vium2639g00002	698	Pfam	Protein kinase domain	18	267	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2639g00002	698	MobiDBLite	consensus disorder prediction	530	545	-	-
	Vium2639g00002	698	SMART	serkin_6	15	267	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2639g00002	698	MobiDBLite	consensus disorder prediction	650	671	-	-
	Vium2639g00002	698	Coils	Coil	41	68	-	-
	Vium2639g00002	698	CDD	STKc_MST3_like	14	287	-	-
	Vium2639g00002	698	MobiDBLite	consensus disorder prediction	654	670	-	-
	Vium2639g00002	698	MobiDBLite	consensus disorder prediction	315	386	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2639g00002	Vium-Chr2639	22794	52264	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2639g00002	1	695	MAP Kinase Kinase Kinase Kinase	AT3G15220	63.390	0.0	837

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-YSK	Vium2639g00002		Pkinase	1e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2639g00002	K08838		-	gmx:100786501	1184.86