Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2638g00001 ATGAGTTTTCTTCTAATATTGTTCATCAGTTGTTTCTTCTGTCTTGGTAAAGCCACAGACTGTGGTGGAAACAATGTTACGCAAACCATCATTGTCGGTAAACAAGAGGACGCAGCATTTAGTACAATTCAAGAGGCCATTGATTCTGTAGAAAACGACAATGATAAATGGATCAAGATTCATATTCAAGCAGGCTTATACATAGAAAGGGTTACTATTCCGAAAGAAAAGCCATGTATAATTTTAGAAGGAGAGGGTAGTTCGACAACAACCATCAGTTACTCAGACCACATATCAATGAACCATAGCGCCACGTTTACTTCTTTACCATCCAATGTGATTGCAAGTGGAATTACTTTCAAGAACTCGTATAATGTGGTAACTAAAAGATACAAATATTACCCTGTGGGAAGCGAAATCGAACCAGCAAATGCAGCAAGACTGCATGGAGATAAATATTTCTTCTATAATTGTAGTTTTTTGGGTTATCAAGACACTTTATACGATCAATATGGACGTCATTACTTCAAAGATTGTTACATTGAAGGTGAAGTGGACTTTATATATGGCAGTGGACAATCTTACTATGAGAACTGTAGGATAAATGTATTGGGAAGATTTTCAGATTCTGCAGGGTTTGTGACAGCTCAGGGACGAAGTTCATCAGATGATCCAGATGGTTTTGTATTTGAAGGAGGCTTCCTTGGTGGGAATGGTAAAGTGAATTTAGGAAGAGCATGGCAACCCTATTCAAGAGTCATATTTCATAAAACATATTTTTCTTCCATTGTAACTCCTCATGGATGGAGTGCTTGGCATTATGCAGGCAATGAGAGTGGAATCACTTATGTTGAAGTTGATTGTGGAGGACCAGGAGCTGATACCTCAAATCGTGTTTCATGGATGAAAAAGCTAAATACTTCAGAAATAGAACAATTTTCTTTAGCATCTTTTATTAATAAGGATGGATGGGTTGACAACTTACCAATAGAATCCTCCTAA 1002 0.3723 MSFLLILFISCFFCLGKATDCGGNNVTQTIIVGKQEDAAFSTIQEAIDSVENDNDKWIKIHIQAGLYIERVTIPKEKPCIILEGEGSSTTTISYSDHISMNHSATFTSLPSNVIASGITFKNSYNVVTKRYKYYPVGSEIEPANAARLHGDKYFFYNCSFLGYQDTLYDQYGRHYFKDCYIEGEVDFIYGSGQSYYENCRINVLGRFSDSAGFVTAQGRSSSDDPDGFVFEGGFLGGNGKVNLGRAWQPYSRVIFHKTYFSSIVTPHGWSAWHYAGNESGITYVEVDCGGPGADTSNRVSWMKKLNTSEIEQFSLASFINKDGWVDNLPIESS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2638g00001 333 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 23 326 - -
Vium2638g00001 333 FunFam Pectinesterase 24 329 - -
Vium2638g00001 333 Gene3D - 23 333 IPR012334 -
Vium2638g00001 333 Pfam Pectinesterase 30 321 IPR000070 GO:0030599|GO:0042545
Vium2638g00001 333 SUPERFAMILY Pectin lyase-like 28 329 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2638g00001 Vium-Chr2638 3559 5711 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2638g00001 2 278 Carbohydrate Esterase AT2G19150 44.840 2.22e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2638g00001 - - var:108336510 659.833