Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2631g00001 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGGAAAGGTTTATGGTCCCCCGAAGAAGATGAGAAGCTCTTCAATTACATAACCCGATTTGGCGTTGGCTGCTGGAGTTCGGTTCCCAAACAAGCTGGACTGCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTACTTGAGGCCGGATTTGAAGAGAGGGATGTTCTCTCAACAAGAGGAGGATCTTATAATTAGCCTTCATGAAGTTCTAGGAAATAGGTGGGCTCAAATTGCAGCTCAGTTACCAGGGAGAACTGATAATGAGATTAAGAACTTTTGGAATTCTTGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCTGCTACACACAAGCCTCTTGTCAGTGCTGAAGATAACATAATAAAGGAAGAGAAGGACACCATAGAGACACCGTCTGTGTTGTTACCAGCGTCTCAAGGGATTTTAGTCTCCTCACAGGATTCACCGCTTCTGGTGAACAATTCAAATTACTATGATGGTTTGTTCAATGTAACAGAAACTTCAAGGGAAGTTTTCGTGAGCAAAAATGCATTGGACCCTTTGTCCTCCTACTTTGAATTCCAAATGGGTTACGATTCAAGTGTGAACCCAATGAGACAGTTTGATCAGAACCAGGTGGGAACCAATTCAAGTTATGGATTCTCCTCATTGCCGTGTCTGAATAGCTCTGATCACCACGGGAACGTGTCGGTGGCAGAGTTTTCAGACAACAACTCAGCTTCTAAAATCAGTTCTTTGTTGAAGGAAAGTTCAAGCAATAGCTCTGGCATGAGTGTTTATCCAGGGGCCGGCTGTCAAATGATGGAAAATGCCGGCTTCTCATCATGGGAATGTGACAATAAAATTGATCCTTTGTTACAGTTTCAAGTCAATGTGGTAAAATCTCAAGAGTTCAAGACAAGTTCGTGGCAAGAAGGCCAATTTCTGACTCAGAATTCCATAGATTTCACTACCTATCCGTTAATGTCACTGTCGGAGGATCTAACAGGAGCAAATTTTAATGTGTTCCAGCATATGTGA 1068 0.4232 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLVSAEDNIIKEEKDTIETPSVLLPASQGILVSSQDSPLLVNNSNYYDGLFNVTETSREVFVSKNALDPLSSYFEFQMGYDSSVNPMRQFDQNQVGTNSSYGFSSLPCLNSSDHHGNVSVAEFSDNNSASKISSLLKESSSNSSGMSVYPGAGCQMMENAGFSSWECDNKIDPLLQFQVNVVKSQEFKTSSWQEGQFLTQNSIDFTTYPLMSLSEDLTGANFNVFQHM 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2631g00001 355 Gene3D - 11 67 - -
Vium2631g00001 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium2631g00001 355 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium2631g00001 355 Gene3D - 69 143 - -
Vium2631g00001 355 CDD SANT 70 109 IPR001005 -
Vium2631g00001 355 FunFam Myb transcription factor 11 67 - -
Vium2631g00001 355 FunFam Transcription factor MYB86 69 139 - -
Vium2631g00001 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium2631g00001 355 PANTHER MYB DOMAIN PROTEIN 55 1 282 - -
Vium2631g00001 355 CDD SANT 17 61 IPR001005 -
Vium2631g00001 355 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium2631g00001 355 SMART sant 66 114 IPR001005 -
Vium2631g00001 355 SMART sant 13 63 IPR001005 -
Vium2631g00001 355 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium2631g00001 355 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium2631g00001 355 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2631g00001 Vium-Chr2631 90892 92754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2631g00001 1 186 MYB Transcription Factor Family AT4G01680 65.775 1.64e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2631g00001 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2631g00001 K09422 - gmx:100799243 567