Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2629g00015 ATGGAGAACAGCCTCTACAACTTTTACTATTCAGCAACTTACACAGACCAATCAACAACAATGGCTCCACCTCCGCCGACTAAGGCTGTCTTTGGGAAGGAAGAGGATGTTTCAAAAGCACTTCGTGATAAAGTAGCTTCTCACCCTCTATTTCCTCACCTCCTCCATGCCTACATCGATTGCCACAAGGTTGGAGCACCACAAGATATGGCAGACCTATTTGAAGGAATCAAAGAAGAGCACAGTGGGGTGTGTCAGATATCTGAATCTAAATCTTATCATAGCTTCTTGGGTGCTGATCCCGAACTTGATAATTTCATGGTAACGTTTTGCGATTTGCTGGTGAAGTACAAATCAGATCTTTCAAGACCCTTTAATGAGGCAACCATGTTCCTCAGCCACATGGAAACTCAGCTTCACTCCATCTGCAACGATCTTGCTGTCTCAGACAACACTCTTCCTCAACCTGCAGTTGGTGGATCATCTGGGAAAGATAGCAAGGAGGGAATTAAGAGAATTGAAAGCAAGAAGACATATGAAGTTGAAGAGGTGAAGGATAATCTTCTAAGTAGATATAGTGGTTACATTACTAATCTGAAGCATGAATTTTCCAGAAAGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAGAAAATCTTACTGGCATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGATGCTGATAAGGTTGCCCTAGCTGAATGGAGTGGTTTGGAGCATAAGCAAGTAAATAATTGGTTTATAAACCAAAGGAAACGGCATTGGAAAGCATCAGAAGAAATGCAGGTTACAATTTTGGATGGACTCTATGGACCCTTGCACGAGTGA 855 0.4187 MENSLYNFYYSATYTDQSTTMAPPPPTKAVFGKEEDVSKALRDKVASHPLFPHLLHAYIDCHKVGAPQDMADLFEGIKEEHSGVCQISESKSYHSFLGADPELDNFMVTFCDLLVKYKSDLSRPFNEATMFLSHMETQLHSICNDLAVSDNTLPQPAVGGSSGKDSKEGIKRIESKKTYEVEEVKDNLLSRYSGYITNLKHEFSRKKKKEKLPKEAKKILLAWWNIHFKWPYPTDADKVALAEWSGLEHKQVNNWFINQRKRHWKASEEMQVTILDGLYGPLHE 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2629g00015 284 Pfam KNOX1 domain 41 80 IPR005540 GO:0003677|GO:0005634
Vium2629g00015 284 ProSiteProfiles 'Homeobox' domain profile. 203 266 IPR001356 GO:0003677
Vium2629g00015 284 SMART ELK_2 183 204 IPR005539 GO:0003677
Vium2629g00015 284 CDD homeodomain 219 265 IPR001356 GO:0003677
Vium2629g00015 284 SMART HOX_1 205 270 IPR001356 GO:0003677
Vium2629g00015 284 Gene3D - 201 273 - -
Vium2629g00015 284 ProSiteProfiles ELK domain profile. 183 203 IPR005539 GO:0003677
Vium2629g00015 284 SMART KNOX2_2 93 144 IPR005541 GO:0003677|GO:0005634
Vium2629g00015 284 SUPERFAMILY Homeodomain-like 205 276 IPR009057 -
Vium2629g00015 284 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 50 271 - -
Vium2629g00015 284 SMART KNOX1_2 39 83 IPR005540 GO:0003677|GO:0005634
Vium2629g00015 284 ProSitePatterns 'Homeobox' domain signature. 241 264 IPR017970 GO:0000981|GO:0006355
Vium2629g00015 284 Pfam KNOX2 domain 98 143 IPR005541 GO:0003677|GO:0005634
Vium2629g00015 284 Pfam ELK domain 185 204 IPR005539 GO:0003677
Vium2629g00015 284 Pfam Homeobox KN domain 223 262 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2629g00015 Vium-Chr2629 170359 183235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2629g00015 40 276 Homeobox Transcription Factor Family AT1G70510 48.133 3.83e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vium2629g00015 KNOX2 4.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2629g00015 - - gmx:102662019 408.297