Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium261g00020 ATGACAAGCTTGGTGCTTCGACCTCTCTCCCTTATAACCCTTTCGTCTCGCATACTCCTTAGATTTTCATTCCTCATGGACCAGATTCCCTCTCTCTCTCTCTCTGATCTCATTTCAACCACACCAACCCAAGAACACAAAGCAACACAAGAGAAGAGAGAGATGGAACCTCAAGGAAGAACACAAGGAGGAGAGAGAGAACCCACAAGGAAGCGAAGCGGCGTGGCGGTGGCGGTGGAGGGAGAGAGAAAATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCGGAAATTAGGGAACCCAACAAGCGTTCCAGGATTTGGCTCGGTTCCTATTCCACCCCTGTCGCTGCCGCACGTGCTTACGACACAGCCGTATTTTACCTCAGGGGACCCTCCGCGCGGCTCAACTTCCCCGACCTTCTTGTTGGAGAGGGCGCCGCCCTTGTAGCCGGTTGCGACATGTCAGCTGCCTCTATTAGGAAGAAGGCCATCGAGGTCGGTGCCAGAGTTGATGCTCTCCAAGCATCGCTCCACCACCACCACGTGGCACCGCCGCTGCCGGAGCTTCTCTCCCGCGGCGACGGAGGTGGGTCCGGGGATTTCGCGGTTGACCTGAACAAGATGCCCGAACCCGAGAGTGAGGACTGCAAATGGGATGTGAATTGA 675 0.5556 MTSLVLRPLSLITLSSRILLRFSFLMDQIPSLSLSDLISTTPTQEHKATQEKREMEPQGRTQGGEREPTRKRSGVAVAVEGERKYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLVGEGAALVAGCDMSAASIRKKAIEVGARVDALQASLHHHHVAPPLPELLSRGDGGGSGDFAVDLNKMPEPESEDCKWDVN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium261g00020 224 CDD AP2 84 143 IPR001471 GO:0003700|GO:0006355
Vium261g00020 224 MobiDBLite consensus disorder prediction 210 224 - -
Vium261g00020 224 FunFam Ethylene-responsive transcription factor 2 83 142 - -
Vium261g00020 224 SUPERFAMILY DNA-binding domain 84 142 IPR016177 GO:0003677
Vium261g00020 224 ProSiteProfiles AP2/ERF domain profile. 84 141 IPR001471 GO:0003700|GO:0006355
Vium261g00020 224 MobiDBLite consensus disorder prediction 40 74 - -
Vium261g00020 224 MobiDBLite consensus disorder prediction 46 74 - -
Vium261g00020 224 PRINTS Ethylene responsive element binding protein signature 123 143 IPR001471 GO:0003700|GO:0006355
Vium261g00020 224 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Vium261g00020 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 54 218 - -
Vium261g00020 224 SMART rav1_2 84 147 IPR001471 GO:0003700|GO:0006355
Vium261g00020 224 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Vium261g00020 224 MobiDBLite consensus disorder prediction 203 224 - -
Vium261g00020 224 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium261g00020 Vium-Chr261 171459 172392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium261g00020 72 218 AP2-EREBP Transcription Factor Family AT3G50260 61.224 6.94e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium261g00020 AP2 1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium261g00020 K09286 - gmx:100527066 258.07