Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium261g00018 ATGTGGGATCTGAATGACTCTCCCGATCAGAGGAAGGACTATGAATCTGAAGGTTGCTCTTCGTTGGATGATGACAAAGGCAGGAGAGTGGGATATGTTTCAAATTCAAGCTCCTCTGCTGTGGTCCTCGACGATGGATTGGAAGAAGAAGACAGTGACAGGGGTGGAAGCAGAACATTGGAGAGAAAAAGTAGTAAAATATTCGGCTTTTCAGTTACACACAATGACAGTGACCACCCGCCCGTCACCCAGCAGTTTTTTTCGGTGGAGGATTCTGACCTTCCTGTCTCTGAAGCAGCCCCCACCGACTGCGGGGGAAGCTCCTTCCCTCGAGCTCACTGGGTAGGTGTAAAATTCCGTCAATCGGAAACTCTTGGCCCCGGAAAATCAGTGAAAATGTCGGAGCCTATAAAGAAAAGTCGGCGAGGACCACGGTCACGAAGCTCACAGTATCGCGGAGTTACCTTTTACAGAAGAACTGGTAGATGGGAGTCTCATATATGGGATTGTGGAAAGCAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCCATTAAGTTCCGGGGAGTGGAGGCAGATATCAATTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGAACAATTTAACGAAAGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGCGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGAAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACAAAGCGGCAATTAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATATATGATAATGAACTTAATTCTGATTCCTCAGGTGTAGCTGCTGATCACAATCTTGATTTGAGTTTGGGCAATTTGAGCTCTAGACGTGGCAATGGTCAAATATCGGGGAATCACTTCCCAAATTCTGCGTCCGATCAGCACCTGCCATCTGCATCTAATTGGCAGAATGGAGGAACAAAGCCTAAGCTTGTAAATATACTACCAAAACCATGTGATAGGAGCAACATGGAAACCTATGCAAGAGATTGGCTTGGGGAGAGTGAAACCTTGAGACTGCTAAACCAAACTCACCTTCAATCTCCAACGACTAAAGAAATGCATAGATAA 1233 0.4599 MWDLNDSPDQRKDYESEGCSSLDDDKGRRVGYVSNSSSSAVVLDDGLEEEDSDRGGSRTLERKSSKIFGFSVTHNDSDHPPVTQQFFSVEDSDLPVSEAAPTDCGGSSFPRAHWVGVKFRQSETLGPGKSVKMSEPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMNNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSDSSGVAADHNLDLSLGNLSSRRGNGQISGNHFPNSASDQHLPSASNWQNGGTKPKLVNILPKPCDRSNMETYARDWLGESETLRLLNQTHLQSPTTKEMHR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium261g00018 410 MobiDBLite consensus disorder prediction 334 362 - -
Vium261g00018 410 SUPERFAMILY DNA-binding domain 241 301 IPR016177 GO:0003677
Vium261g00018 410 ProSiteProfiles AP2/ERF domain profile. 242 299 IPR001471 GO:0003700|GO:0006355
Vium261g00018 410 FunFam AP2-like ethylene-responsive transcription factor 241 301 - -
Vium261g00018 410 Gene3D AP2/ERF domain 241 300 IPR036955 GO:0003700|GO:0006355
Vium261g00018 410 Gene3D AP2/ERF domain 149 208 IPR036955 GO:0003700|GO:0006355
Vium261g00018 410 PRINTS Ethylene responsive element binding protein signature 281 301 IPR001471 GO:0003700|GO:0006355
Vium261g00018 410 PRINTS Ethylene responsive element binding protein signature 243 254 IPR001471 GO:0003700|GO:0006355
Vium261g00018 410 MobiDBLite consensus disorder prediction 334 371 - -
Vium261g00018 410 FunFam AP2-like ethylene-responsive transcription factor 149 208 - -
Vium261g00018 410 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 349 - -
Vium261g00018 410 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
Vium261g00018 410 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Vium261g00018 410 SMART rav1_2 242 305 IPR001471 GO:0003700|GO:0006355
Vium261g00018 410 Coils Coil 200 220 - -
Vium261g00018 410 CDD AP2 150 207 IPR001471 GO:0003700|GO:0006355
Vium261g00018 410 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Vium261g00018 410 MobiDBLite consensus disorder prediction 125 150 - -
Vium261g00018 410 CDD AP2 241 301 IPR001471 GO:0003700|GO:0006355
Vium261g00018 410 MobiDBLite consensus disorder prediction 1 60 - -
Vium261g00018 410 Pfam AP2 domain 241 290 IPR001471 GO:0003700|GO:0006355
Vium261g00018 410 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Vium261g00018 410 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium261g00018 Vium-Chr261 147690 152116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium261g00018 1 335 AP2-EREBP Transcription Factor Family AT4G36920 66.384 1.93e-129 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium261g00018 AP2 2.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium261g00018 K09284 - gmx:100786333 697.197