Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium261g00012 ATGGCGTCGTCGAAGCCTTCGCCTTCGCCCTCATCTTCCAGATCGGAGCTTATCATCGATCCTTCCGGTGAGAAAGTGGACGCTGTGAGTCAGACTGTTGAAGATGTGTTACCGGTTATTGATTCTTTAAAGAAAGAAGTTGCTGTGGAACGGATTGTTTATGTAAAGAATAGAATAGAGGAAAACAGACAGAAGCTGGTTGGTGTCACAAATCATGTCTGCAAAATGGCAATGGAGAGAAGGAACAGCAGCGTTGCTGATTCTAACAGAAGTCTAGACCTGCTTACAAAGAGGCAAAAAGATGCAATTGATATGCACAACGGTGTTCATGCAAGTAATGGTGATGTAGAGAGCAATGGCTACCATGAAGATACCCATGGTTCTACAGCAGTTCTTCTAGGGTCTAATGTTGCTGTTAAGAATGCTGTTCGTCCTATCAAATTACCTGAAATAAAAAAATTGCCTCCTTATACTACATGGATATTTCTGGATAGAAATCAAAGAATGACCGAGGATCAATCAGTTGTAGGCCGAAGACGAATTTATTATGATCAAAATGGTGGAGAAGCACTTATATGCAGTGACAGTGAGGAAGAAATTATGGAGGATGAAGAGGAGAAAAGAGAATTCATAGAATCAGAAGATTATATACTTCGCATGACTGTCAAAGAATTCGGTTTAACTGACAGCGTTATGGAGTCATTGGCTCAGTGCTTTTCTAGAAACACTAACGAAATTAAGGCAAGGTATGAAGCTCTTAGTATTCAAAACAATGCTGATGGGTCTTCCAAGGCTGTAGATTCTGGAGAGAACTCTCAGAGTGGAAATTCTTTTCTGGAAAAGGATCTTGAAGCGGCTCTTGACTCTTTTGACAACCTCTTTTGTCGACGATGTCTCGTTTTTGATTGTAGATTACATGGATGTTCACAGGATCTTGTCTTCCCAGCTGAGAAGCAACCTATATGGATCCCTCCTGATAGTGAAAATGCACCCTGTGGGCCAAATTGTTTCCGATCGGTGCTTAAGTCAGAAAGATTTGCCAAAACATCTTCTGCCCAGGCTGATGGTGAAGATAAGTGCTCTGGTGGTGTTTTATCTCGGAAAAAGTCTTCTGCCAAAAGGCGGTTAAAAGGAAGCCAAAGTGAAAGTGCTTCATCTAACGCAAAGAACATATCTGAGAGTAGTGACTCAGAGAATGGTCCTGGACGAGATGCTGCTTCAGCATCTCACTCAGCTCCTCCTAAAGCTAAACCCATGGGGAAAGGAATCGGTAAGAGGAACAGTAAGCGAGTGGCAGAACGAGTCTTAGTATGCATGCAGAAAAGGCAGAAGAAACCAGTAGTTTCTGATTCCGATTCCATAAGTGAAGCTCTTGAGCGCTCATCAAATGATATTGTCACTGATCTACATGCTATGAGCAGTGAAGACAACACAAGGAAAGAAGATTCTGTAGATGACAATGTTTGTAAACAAGAAATCACAGACAATAAAGCTTGGAAAGCTCTTGAAAAGGGGCTTTTAGAGAAAGGAATGGAGATTTTTGGTAGAAACAGTTGCTTAATAGCTAGGAATCTCTTAAATGGTCTAAAGACTTGTTGGGATGTTTTCCAATACATAAATTGTGAAGAAGGAAAGATGTCTGGTCCCCCTGGGGATGTTGCAAATTCCCTTTTGGAGGGCTATTCCAAGGGTAATAATGAAGTGAGAAGAAGATCCAGGTTTTTACGCAGAAGAGGAAGAGTCCGTCGATTGAAGTACACATGGAAATCCGCCGCTTATCATTCCATCAGGAAAAGGATTACAGAGAGAAAGGATCAACCCTGCCGGCAGTATAATCCATGCGGTTGCCAATCAGCTTGTGGAAAGCAGTGCCCTTGTCTTCTTAATGGAACCTGCTGTGAGAAGTACTGTGGGTGCCCCAAGAGTTGCAAGAATCGGTTTCGTGGTTGTCATTGTGCTAAGAGTCAATGCCGAAGTCGACAATGTCCATGCTTTGCCGCTGATAGGGAATGTGATCCAGATGTCTGTAGGAATTGTTGGGTCAGTTGTGGCGATGGTACTCTTGGGATTCCTAGCCAAAGAGGGGACAATTACGAATGTAGAAACATGAAGCTTCTTCTCAAACAGCAGCAAAGGGTTCTTCTTGGAAGGTCGGATGTATCAGGCTGGGGAGCCTTCTTAAAGAATAGTGTTGGTAAACATGAATACCTTGGAGAGTATACAGGAGAGTTGATTTCTCATCGGGAAGCAGATAAGCGAGGAAAGATATATGACCGTGAAAATTCATCTTTTCTCTTTAATTTGAATGACCAGTTCGTTCTAGATGCTTACCGAAAGGGTGATAAATTGAAGTTTGCGAACCATTCGCCCGATCCAAATTGCTATGCGAAGGTTATAATGGTTGCTGGAGATCATAGGGTAGGCATTTTTGCAAAGGAACGGATTTGCGCCGGGGAGGAACTGTTCTATGATTATCGTTATGAGCCTGACAGGGCCCCTGTCTGGGCTCGGAAACCTGAGGCATCTGGATCCAAAAAAGAGGACGGGGCTCCTTCAAGTGGTCGTGCAAAGAAGCTTGCTTAA 2583 0.4301 MASSKPSPSPSSSRSELIIDPSGEKVDAVSQTVEDVLPVIDSLKKEVAVERIVYVKNRIEENRQKLVGVTNHVCKMAMERRNSSVADSNRSLDLLTKRQKDAIDMHNGVHASNGDVESNGYHEDTHGSTAVLLGSNVAVKNAVRPIKLPEIKKLPPYTTWIFLDRNQRMTEDQSVVGRRRIYYDQNGGEALICSDSEEEIMEDEEEKREFIESEDYILRMTVKEFGLTDSVMESLAQCFSRNTNEIKARYEALSIQNNADGSSKAVDSGENSQSGNSFLEKDLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPIWIPPDSENAPCGPNCFRSVLKSERFAKTSSAQADGEDKCSGGVLSRKKSSAKRRLKGSQSESASSNAKNISESSDSENGPGRDAASASHSAPPKAKPMGKGIGKRNSKRVAERVLVCMQKRQKKPVVSDSDSISEALERSSNDIVTDLHAMSSEDNTRKEDSVDDNVCKQEITDNKAWKALEKGLLEKGMEIFGRNSCLIARNLLNGLKTCWDVFQYINCEEGKMSGPPGDVANSLLEGYSKGNNEVRRRSRFLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGCQSACGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVSCGDGTLGIPSQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERICAGEELFYDYRYEPDRAPVWARKPEASGSKKEDGAPSSGRAKKLA 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium261g00012 860 SMART set_7 711 832 IPR001214 GO:0005515
Vium261g00012 860 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 860 IPR025778 GO:0031519
Vium261g00012 860 Coils Coil 194 214 - -
Vium261g00012 860 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 31 858 IPR045318 GO:0006338|GO:0042054
Vium261g00012 860 ProSiteProfiles SET domain profile. 711 826 IPR001214 GO:0005515
Vium261g00012 860 MobiDBLite consensus disorder prediction 377 404 - -
Vium261g00012 860 MobiDBLite consensus disorder prediction 351 428 - -
Vium261g00012 860 Gene3D SET domain 611 828 IPR046341 -
Vium261g00012 860 CDD SET_EZH 711 827 - -
Vium261g00012 860 MobiDBLite consensus disorder prediction 836 860 - -
Vium261g00012 860 Pfam SET domain 722 825 IPR001214 GO:0005515
Vium261g00012 860 Pfam CXC domain 649 680 IPR041355 -
Vium261g00012 860 MobiDBLite consensus disorder prediction 836 853 - -
Vium261g00012 860 SMART CXC_2 645 682 IPR033467 -
Vium261g00012 860 SUPERFAMILY SET domain 585 831 IPR046341 -
Vium261g00012 860 MobiDBLite consensus disorder prediction 1 18 - -
Vium261g00012 860 MobiDBLite consensus disorder prediction 1 23 - -
Vium261g00012 860 ProSiteProfiles CXC domain profile. 597 696 IPR026489 -
Vium261g00012 860 FunFam Putative histone-lysine N-methyltransferase EZH2 611 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium261g00012 Vium-Chr261 88668 101465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium261g00012 700 829 C2H2 Transcription Factor Family AT2G23740 27.211 1.03e-09 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium261g00012 SET 8.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium261g00012 - K11430 gmx:100809840 1532.69