Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium261g00009 ATGACTATCACCAACGAAGACCAACAACAAATTCAAATACCTGGCCACAAACATCTCCGTCACAAGAGTCTCCTTCAGAGCGATGCACTCTATCAGTATATACTTGAGACCAGTGTATACCCAAGAGAGCACGAGAGCTTGAAGGAGCTACGCGAGTTGACGGAAAAACACCCTTGGAACCTCTTAGCTACACCACCTGACGAAGGACAACTTCTAAGGATGTTACTGAAGGTGATCAATGCGAAGAACACCATGGAGATTGGCGTCTACACCGGTTACTCCTTGCTTTCCACTGCCCTCGCTCTTCCGTCTGATGGAAAGATCCTGGCAATGGATATTAGCAGGGAATATTATGAACTGGGGTTGCCTGTGATTGAAAAGGCAGGAGTGGCTCACAAGATTGACTTCAGAGAAGGTCCAGCACTTCCTCTTCTTGATCAACTCATCAAAGACGAAAATAACAAGGGAAGCTTCGATTTCATCTTCGTCGATGCTGATAAGGATAACTACTTGAACTATCACAATAGGGTGATTGAGCTTGTCAAGATTGGGGGAATGATCGCCTACGATAACACCCTGTGGAACGGCTCTGTGGCCGCCCCATCCGATGCTCCTCTCTTGGATTATATTAAGTATTATCGCGATTTTGTGATAGAGCTGAATCAAGCACTTGCACTTGATTCAAGGGTCGAGATTTGCCAGCTTCCCGTTGGTGACGGCATTACACTGTGCCGCCGCATCATCTGA 747 0.4672 MTITNEDQQQIQIPGHKHLRHKSLLQSDALYQYILETSVYPREHESLKELRELTEKHPWNLLATPPDEGQLLRMLLKVINAKNTMEIGVYTGYSLLSTALALPSDGKILAMDISREYYELGLPVIEKAGVAHKIDFREGPALPLLDQLIKDENNKGSFDFIFVDADKDNYLNYHNRVIELVKIGGMIAYDNTLWNGSVAAPSDAPLLDYIKYYRDFVIELNQALALDSRVEICQLPVGDGITLCRRII 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium261g00009 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
Vium261g00009 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 246 IPR029063 -
Vium261g00009 248 Gene3D Vaccinia Virus protein VP39 13 248 IPR029063 -
Vium261g00009 248 FunFam Caffeoyl-CoA O-methyltransferase 1 16 248 - -
Vium261g00009 248 PANTHER O-METHYLTRANSFERASE-RELATED 20 247 - -
Vium261g00009 248 Pfam O-methyltransferase 36 247 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium261g00009 Vium-Chr261 68521 69911 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium261g00009 6 247 Monolignol Biosynthesis Gene Families AT4G34050 75.620 3.67e-142 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium261g00009 K00588 - gmx:100799303 450.669