Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium261g00008 ATGCCCTTCTTCCTTTTCCTTTTCCTTTTCCTTTTCCACAATTTTCTGAAAGTGGTTGGTTGCATTACCATTTACTACTTTCTTTCTCAACACACGGAAACAAAATCAACAAAACCACCCCAACTCAATCCATCTCTGCATTCTTCTTTTTTTTCTGCTCACACACCTGTAGGAATGGGCGACATGTACCACTTTGACAAGAATCTCTCTTCGCAGGACGAAATCTCACTTTTTCTGCGTCAGATTCTCCTCCGTTCATCTCCTTCTTCTTCTTCATCACCCCACTCCGTCCCCGGATCCTGCAACTCCAACATATCTCACCAAAACGTCAATTCTCACGCTTCTTTCACGCCCTCGCACCTCCAACACGGCAAGATCTCGAACCTTGGTTCCACCGCCACTTTTGTCTCGCCTTCTGGCACTTGCGGTTCCTTCAAGGCCCAGACTGCTTCTGCTGCAAATGTGTCTTCTTCTTCTGTTTTAGTGAGCGAGAACGAGAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTCGAAGCTTTGGCCGAAGAACTTCCAACAAAGCCTATTCCTTCAAGGAGTTCATCTAAGAGATCAAGAGCTGCTGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGGATCAACGAGAAAATGAAGGCCTTGCAAAATCTAATTCCGAATTCTAACAAGACGGACAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAACTTCAGCTGCAAGTACAGATGCTGTCAATGAGAAATGGGTTGACTTTGCATCCTATGTGCTTTCCAGAAGGCTTACAGCCACTGCAGTTATCTCAGATGGGCATGGAACTGAGTGAAAGAAACAGGTCTACCCCTTTAAACATGACAGCTACTCTGCCTCTCCACCAAGAGAACCCCTTGCACTACACATCCAATCTACCTAGCAAACACATTCTGCCAAATCAGCCATCTGCACCATATCCTTCATTTATTAACAACCCAGAAACTTCTTTTGGGCTGGAATCCCGAATCCAACCAGAAACAAAACCTCTTCAACACAAAGGAGGACCTTCTGGGCCAATACGCGGGGAAGACATTTTGCATTACCAGCAACCAAGTGCTATCCATTCAGATGCTAATACATTAGGTAGTTCTCAAGTTGTGAAAGAATTCGAGTCAGGCACAACAGTATCACTCTCCTTTGACACGCAAACATGCGAACCATGCATTGGCCGAAGAGAACAGTCAGGAGTGATCATAAGAAATAGTGAGGCCAACATTGTTGTTACATCGCAGTTAAGTAGGTAA 1311 0.4447 MPFFLFLFLFLFHNFLKVVGCITIYYFLSQHTETKSTKPPQLNPSLHSSFFSAHTPVGMGDMYHFDKNLSSQDEISLFLRQILLRSSPSSSSSPHSVPGSCNSNISHQNVNSHASFTPSHLQHGKISNLGSTATFVSPSGTCGSFKAQTASAANVSSSSVLVSENENDDYDCESEEGVEALAEELPTKPIPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLTLHPMCFPEGLQPLQLSQMGMELSERNRSTPLNMTATLPLHQENPLHYTSNLPSKHILPNQPSAPYPSFINNPETSFGLESRIQPETKPLQHKGGPSGPIRGEDILHYQQPSAIHSDANTLGSSQVVKEFESGTTVSLSFDTQTCEPCIGRREQSGVIIRNSEANIVVTSQLSR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium261g00008 436 Gene3D - 195 259 IPR036638 GO:0046983
Vium261g00008 436 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Vium261g00008 436 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 67 362 IPR031066 -
Vium261g00008 436 MobiDBLite consensus disorder prediction 198 212 - -
Vium261g00008 436 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 261 IPR036638 GO:0046983
Vium261g00008 436 Pfam Helix-loop-helix DNA-binding domain 204 250 IPR011598 GO:0046983
Vium261g00008 436 MobiDBLite consensus disorder prediction 184 212 - -
Vium261g00008 436 CDD bHLH_AtPIF_like 201 263 IPR047265 -
Vium261g00008 436 FunFam Basic helix-loop-helix transcription factor 195 258 - -
Vium261g00008 436 SMART finulus 206 255 IPR011598 GO:0046983
Vium261g00008 436 Coils Coil 239 259 - -
Vium261g00008 436 Coils Coil 435 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium261g00008 Vium-Chr261 46654 50099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium261g00008 63 281 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 51.440 8.36e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium261g00008 HLH 5.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium261g00008 - - vum:124831111 805.053