Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium261g00007 ATGCCCGATCAGTCGAGCGGCGCCGCAATGAACGACCAGCTCTCCAACCCCACCTCCATATTTGGTCTCCGTCTCTGGGTGGTGCTCGGCGTGTGTGTCGGCGCCGCCATCGTCCTCATCCTCTTCCTTATCTCCGTCTGGGTGGCCTTCAAGCGCTCCAAAGCCAACCCCGTTTCCATCCCCGACGTCTCCAAGGAGATCCAAGAAATAAGGGTCGACCACGCCCCCACCCCCAACCCGACCCACCAACCCGACCCTTTTCCCGAACCTGACCCAGTTCCGCCCACCGAGGAAGAAACCAACCCTCTCAGCTACCAGAGAATCCAGTTCGAGATTGGGAAGAACCACCGAATCTCCTACCCCGAACGTGCCTTGCTTCGCTCATCTTCCAACGACCCCGCCGGTGCTGAGCCTCGCCTCCTCGATCAGGTTCCCACCGTCATTCCCGAAGTTTCTCACTTGGGCTGGGGCCACTGGTACACTCTCCGAGAGCTTGAGGATTCCACCAACGCCTTCGCCCCTGAGAATGTTATTGGCGAAGGAGGTTATGGAATTGTTTACCACGGTATCTTGAACGACAATACTCATGTTGCCATCAAGAACTTGCTCAATAATAGGGGGCAAGCTGAGAAGGAATTTAAGGTTGAAGTGGAAGCTATAGGACGGGTTCGCCACAAGAATTTAGTCAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGAATGCTTGTTTATGAGTATGTCGACAATGGTAACTTGGAGCAGTGGCTACATGGGGATGTTGGGCCTTACAGTCCTCTAACATGGGAAATTCGGATGAACATTATTCTGGGAACGGCTAAAGGGCTAACTTATTTACATGAGGGGTTGGAACCAAAAGTTGTTCATCGTGATATTAAATCAAGCAACATTTTGCTCAGTAAGCAGTGGAATGCAAAGGTGTCAGACTTTGGCCTCGCCAAACTCCTTGGCTCTGACAACAGTTATATCACCACCCGTGTCATGGGTACTTTTGGATATGTTGCTCCTGAATATGCAAGTACTGGCATGTTGAATGAACGAAGTGATGTTTATAGTTTTGGAATTCTGATCATGGAAGTTCTTACAGGAAGGAACCCTGTTGATTATAGTCGGCCTCCAGAAGAGGTGAATTTGGTAGACTGGCTGAAGAAGATGGTCAGTAACAGGAACCCAGAGGGGGTGCTGGATCCCAAGCTTCCCGAGAAACCAACTTCAAGGGCATTAAAACGAGCCCTTCTTGTAGCCTTACGTTGCACTGATCCTAATGCACAGAAGCGACCTAAAATGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGGATCGCAGAGCTAGAAAGGATGCAGGACATTCACCCAATGACAGAGTAGGGGATGGGTTGAAAGAGGAGGCAGATGTATCAGTTGATGATCCCAAGCTTGAGACAAGAACGAACCCTCAAATAGAAAAGCAATAA 1491 0.499 MPDQSSGAAMNDQLSNPTSIFGLRLWVVLGVCVGAAIVLILFLISVWVAFKRSKANPVSIPDVSKEIQEIRVDHAPTPNPTHQPDPFPEPDPVPPTEEETNPLSYQRIQFEIGKNHRISYPERALLRSSSNDPAGAEPRLLDQVPTVIPEVSHLGWGHWYTLRELEDSTNAFAPENVIGEGGYGIVYHGILNDNTHVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPYSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWNAKVSDFGLAKLLGSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVLTGRNPVDYSRPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEDRRARKDAGHSPNDRVGDGLKEEADVSVDDPKLETRTNPQIEKQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium261g00007 496 MobiDBLite consensus disorder prediction 74 101 - -
Vium261g00007 496 CDD STKc_IRAK 178 444 - -
Vium261g00007 496 Pfam Protein kinase domain 175 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium261g00007 496 MobiDBLite consensus disorder prediction 437 496 - -
Vium261g00007 496 FunFam Putative receptor-like serine/threonine-protein kinase 248 458 - -
Vium261g00007 496 SUPERFAMILY Protein kinase-like (PK-like) 148 444 IPR011009 -
Vium261g00007 496 Gene3D Transferase(Phosphotransferase) domain 1 248 461 - -
Vium261g00007 496 FunFam Probable serine/threonine-protein kinase At1g01540 152 247 - -
Vium261g00007 496 ProSitePatterns Protein kinases ATP-binding region signature. 178 200 IPR017441 GO:0005524
Vium261g00007 496 PANTHER OS01G0323000 PROTEIN 8 459 - -
Vium261g00007 496 ProSiteProfiles Protein kinase domain profile. 172 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium261g00007 496 Gene3D Phosphorylase Kinase; domain 1 152 247 - -
Vium261g00007 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Vium261g00007 496 MobiDBLite consensus disorder prediction 430 496 - -
Vium261g00007 496 SMART serkin_6 172 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium261g00007 496 MobiDBLite consensus disorder prediction 79 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium261g00007 Vium-Chr261 40238 42909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium261g00007 16 439 Trihelix Transcription Factor Family AT1G68690 38.515 1.79e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vium261g00007 Pkinase 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium261g00007 - - gmx:100797726 884.789