Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium261g00005 ATGTTTGTTTTGATGTACTATAAAGGTTTATTAACGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCCGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGTCGTCTGCTTAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCACGTGTTTGACACTGTTTCTTGTATAGAAAAGATGGAGGCCAAATCTAGAATAACTATAGAGAAAGAGTTGATAAAAATTAGGCCGATGATTGATCCAGCAGCTTCAACAGCGCAGAAGATCAGGGACCGTTGTGCCTTTGGTTGGGTGAGACTGGAGGATCTGGTCATATCAGTTTAA 378 0.418 MFVLMYYKGLLTCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLLRKYTEADLYKQLSYFCHVFDTVSCIEKMEAKSRITIEKELIKIRPMIDPAASTAQKIRDRCAFGWVRLEDLVISV 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium261g00005 125 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 2 124 - -
Vium261g00005 125 Gene3D DNA Polymerase alpha, zinc finger 1 110 IPR038256 -
Vium261g00005 125 Pfam DNA Polymerase alpha zinc finger 3 121 IPR015088 GO:0003887|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium261g00005 Vium-Chr261 31229 32107 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium261g00005 2 123 Core DNA Replication Machinery Family AT5G67100 63.934 2.42e-54 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium261g00005 K02320 - vum:124824102 254.988