Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium261g00003 ATGGCGGACGAGGAGCCAGTAAGCGGAAGGAGAAGGCCCAGGGGACCGGAGTCCACCGCTCGCAGCGAAGCGTTGGAGCGTCTCAAGGCCCGCCTCCGCGGTGGTCGTCGATCCGATAGCACTGGGCCCCAAATCAGGTTAGAAAACCCTGTCTACGACACTGTCCCTGAGGACGAGTACAATGCCCTCGTCGCCAAGCGCCGTGAACAGGCGCGCTCCTTTATAGTCGACGACGAAGGAATCGGATACGGCGATGAGGGCGAGGAAGAGGACTGGTCTCAGGCCGGATTCACTCTCTCCTCTGATGAATCCGAAGGCGAATCGGAGAGGCCGAAGCGGAAGAAGGTCGAGAAGAAGGATCCTCAGCCGAAACGGCCTTCTTCATCGCTCTCCGCCGCTGCGGCCATGATGGGAGGGCAGAGGTTGTCCTCCATGTTCACTTCCTCCGTTTTCAAGAAGAGCAGAGACGACAAAGTCTGCGAGAGCATCGTCGACGATGTTATCGCGGAGTACGCTGCGGACGAGACTGATAGACTGAGGCGTAGAAGGGCGAAAGGGAATTCCTCTTCCACTTCTGACGCAAACAATGTTTTGCGTGTTAATACCGCGTTTAGGGATAAGCCTTCTGTTTGTATGATGCAAGATTCTTCTTCATTGCCGGAACATGGTAACCCTGACTCTGTTAAGGTATTTGTTGAGAGTGATGGTTTTGACTCGGGGTTTGAGCCAATGAGCGTGGTGGTTAGTGAAGTCCAAGATTTCGGGCGTGGTAGTTCTGAGAATGGGCAGACACCGACGGTGGTAGCCGATGATTCTGAAGTTAATGAATGTATGGTTGAAGTGAAAGCGGATGCAAAGAAGGAGGTGTTCACTTTGAACGCGAAGGTTAAAGAAGCGGACGACACTGCATTGTCTGCTACTGCTGGTTGGAAGGAAGCAATACGCGGTGCTGGTGGGGTTGATGTTACTGATTCAAAGGATGCTTTGGAGAACTTACACTTAGAGTTTGATCTGGAGGAAGATGGATCACTGCCTTTCTACATATTAGACTCCTACGAGGAGTTTTATGGGGAAAACAGGGGCACCATTTATCTCTTTGGGAAGGTTAAGACTGGGGATTTGTATCAGAGTTGTTGTGTTATTGTCAAGAGCATGCAGAGGTGTGTCTATGCAGTTCCTAGCCGACCCTCGCTTCGCACTGAAGAGATGATGAGTCTCGAGAGAGATGTCCAGGAGTCTCGAATTTCTTCTGCGGATTTCTTTAAAAAGCTGCAAGATGCAGTAGCTGATGTTAAGAATGAGATAGCACAACATCTGGTGAATTTGGATGTTTCGAACTTTAGTATGGCACCTGTTAAGAGGAAATATGCATTTGATCGATTTGAAGTTCCTACAGGGGAAAATTATGTGGTGAAAATAAATTATTCATTCAAGGATCCTGTACTTCCAGCAGATCTCAAAGGAGAAAGTTTCTGTGCTCTCTTAGGAACTAGTTGCAGTGCCCTTGAGCTTTTTCTGATTAAACGGAAGATAAAGGGGCCTTCATGGCTACGGGTTTCAAAGTTTGCTACAAGCTCATCTTCCCGAAGGGTTAGCTGGTGCAAATTTGAAGTAACTGTTGACTCTCCTAAACTCATAAAGACATCAGCTCCTTCAAAAATCACTTATAATATTCCTCCAGTGGTTGTTGCAGCAATAAACTTGAAAACCACCATAAATGAAAAGCAGAAAATAAATGAGATTGTATCAGCATCCGTTGTCTGTTGTAACATGGTTAAGATTGATGCCCCTATGATGGCTTCAGAGTGGAGGAGACCCGGAAGGCTGACCCATTTTACTGTTGTTCGTAAACTTGATGGGAGTATATTTCCAATGGGATTCAACAAGGAGGTTACGGACAGAAACTTAAAAGCTGGTTCAAATATTCTGTGTGCTGAAAGCAGTGAAAGAGCTTTATTGAACCGCTTGATGTTAGAATTGCACAAGTTGGATTGCGATGTTCTGGTTGGACATAATATATCTGGATTTGACCTGGATGTTCTTCTCCACAGATCCCAGGCCTGCAAAGTGGCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACAGATCGACTATGCCTAAACTTGGAAGAAGAAGTAAGGTTTTTGGTTCTGGAGCAGATCCTGGTATCATGTCATGCATTGCTGGCAGGCTTCTTTGTGATACATACTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTACTCTTTAAGTCACCTTGCAAAATCACACCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAGTCAGCAGAATCGCTAATGGAGCTTATTGAATACGGTGAAACAGATGCATGGTTGTCTATGGAACTAATGTTTTATTTAAGTATTCTTCCACTCACCCGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGGGTTGAATATCTTTTGCTGCATACTTTCCATGCAGTGAAATATATGGTGCCAGACAAGTTCTCAAACTATTCTAAAGAAACGAAATTGACGAAACGTAGAGTAACCCACGATGCTGAAGATAGCAACTACGATGTAGATGTTGACGATGTAAACTATGACAATGATGCTTCTGAAGCTGATAATAAGAAAAGCAAAAAGGGTCCTTCTTATGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATACTACTTCTGGATTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATTTGCTTTACAACTGTTGAAAAATCTTTGGATGGATCTTTTCCACGTCTACCATCAAGTAAAACAACTGGAGTCTTGCCAGAGGTGCTGAAAAATCTGGTAGATAGGAGGAAGAAGGTAAAGTCGTGGATAAAGAATGAAAAAAAGAAGAATGAAAAAGCTGATCCTATAAGGGTTCAGCAACTGGATATTCAGCAGCAAGCACTAAAGCTTACTGCTAACAGTATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCGTTGGCTGAGCTTATTACTTTACAAGGAAGGGAGATACAGCAGAGTACTGTTGATTTAGTTCAGAATGCCTTGAATTTAGAGGTGATCTATGGCGACACGGATTCAATAATGATTTACAGTGGGCTGGATGATATTGAGGAAGCTAATAAAATTGCTGTAAAAGTTATTCAAGAGGTCAATAAGAAATATAAATGTTTGGAAATTGATCTTGATGGTTTATATAAAAGAATGCTGCTTCTCAAGAAAAAGAAGTATGCAGCTGTAAAGTTGCTGTTTAAAGATGGCACCCCATATGAGGTGATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCTGGAGGGTCATGTGAAGATGTAGTGGAGTCAATTCACAACTCGCTCATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTCATTACGAAGACTTTGACTAAACCTCCTGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCTTCTGGCTGTTCTGTTGGTGATACAATCCCGTATATAATTTGTTATGAACAGGGTGGCAGTTCAGGCAGTGCTGGTGGCATTGCTCAACGTGCTAGACATCCTGAAGAACTTAAACGGGAACAAGGGACATGGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCCGTAGTATCACGCCTCTGTGCATCAATTCAGGGAACAAGCCCAGAAAGACTGGCTGATTGCTTAGGTCTTGACTCCTCAAAGTTTCATCATAAATCAAGTGAAGCTTTTAATGATGATTCTAGCAGTTTACTCTTGTCTGCTGCTAATGATGAAGAGAGGTATCGGGGATGTGAGCCGTTGGTGTTGTCATGCCCCAGCTGCTCTGGTACATTTAACTGCCCACCCGTCTCTAAATCTATTTGCTGCTTGTTGGGAAGTGGAATGACAACCAGCGTATCCACCGAGGAATCTGACTTCAATTTCTGGCGTAAGCTGTGTTGTCCTAAATGCCCCGAAGATGTCAAAATTTCTCCAGCGATGATAGCGAATCAGGTCAAAAGGCAAGCAGATATGTTTGTTTTGATGTACTATAAAGGTTTATTAACGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCCGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGTCGTCTGCTTAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCACGTGTTTGACACTGTTTCTTGTATAGAAAAGATGGAGGCCAAATCTAGAATAACTATAGAGAAAGAGTTGATAAAAATTAGGCCGATGATTGATCCAGCAGCTTCAACAGCGCAGAAGATCAGGGACCGTTGTGCCTTTGGTTGGGTGAGACTGGAGGATCTGGTCATATCAGTTTAA 4605 0.4376 MADEEPVSGRRRPRGPESTARSEALERLKARLRGGRRSDSTGPQIRLENPVYDTVPEDEYNALVAKRREQARSFIVDDEGIGYGDEGEEEDWSQAGFTLSSDESEGESERPKRKKVEKKDPQPKRPSSSLSAAAAMMGGQRLSSMFTSSVFKKSRDDKVCESIVDDVIAEYAADETDRLRRRRAKGNSSSTSDANNVLRVNTAFRDKPSVCMMQDSSSLPEHGNPDSVKVFVESDGFDSGFEPMSVVVSEVQDFGRGSSENGQTPTVVADDSEVNECMVEVKADAKKEVFTLNAKVKEADDTALSATAGWKEAIRGAGGVDVTDSKDALENLHLEFDLEEDGSLPFYILDSYEEFYGENRGTIYLFGKVKTGDLYQSCCVIVKSMQRCVYAVPSRPSLRTEEMMSLERDVQESRISSADFFKKLQDAVADVKNEIAQHLVNLDVSNFSMAPVKRKYAFDRFEVPTGENYVVKINYSFKDPVLPADLKGESFCALLGTSCSALELFLIKRKIKGPSWLRVSKFATSSSSRRVSWCKFEVTVDSPKLIKTSAPSKITYNIPPVVVAAINLKTTINEKQKINEIVSASVVCCNMVKIDAPMMASEWRRPGRLTHFTVVRKLDGSIFPMGFNKEVTDRNLKAGSNILCAESSERALLNRLMLELHKLDCDVLVGHNISGFDLDVLLHRSQACKVASSMWSKLGRLNRSTMPKLGRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLSHLAKSHLNKFRKEVAPHEVPKMFQSAESLMELIEYGETDAWLSMELMFYLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAVKYMVPDKFSNYSKETKLTKRRVTHDAEDSNYDVDVDDVNYDNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVEKSLDGSFPRLPSSKTTGVLPEVLKNLVDRRKKVKSWIKNEKKKNEKADPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREIQQSTVDLVQNALNLEVIYGDTDSIMIYSGLDDIEEANKIAVKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVPLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSAGGIAQRARHPEELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEAFNDDSSSLLLSAANDEERYRGCEPLVLSCPSCSGTFNCPPVSKSICCLLGSGMTTSVSTEESDFNFWRKLCCPKCPEDVKISPAMIANQVKRQADMFVLMYYKGLLTCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLLRKYTEADLYKQLSYFCHVFDTVSCIEKMEAKSRITIEKELIKIRPMIDPAASTAQKIRDRCAFGWVRLEDLVISV 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium261g00003 1534 Gene3D - 386 512 - -
Vium261g00003 1534 Gene3D Palm domain of DNA polymerase 886 1116 IPR023211 -
Vium261g00003 1534 Pfam DNA polymerase family B 818 1287 IPR006134 GO:0000166|GO:0003677
Vium261g00003 1534 NCBIfam DNA polymerase (pol2) 51 1285 - -
Vium261g00003 1534 ProSitePatterns DNA polymerase family B signature. 1055 1063 IPR017964 GO:0000166|GO:0003676
Vium261g00003 1534 PRINTS DNA-directed DNA-polymerase family B signature 917 930 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vium261g00003 1534 PRINTS DNA-directed DNA-polymerase family B signature 1000 1012 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vium261g00003 1534 PRINTS DNA-directed DNA-polymerase family B signature 1053 1061 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vium261g00003 1534 FunFam DNA polymerase 559 873 - -
Vium261g00003 1534 CDD POLBc_alpha 893 1303 IPR045846 GO:0003887|GO:1902975
Vium261g00003 1534 Gene3D DNA Polymerase alpha, zinc finger 1326 1519 IPR038256 -
Vium261g00003 1534 MobiDBLite consensus disorder prediction 103 124 - -
Vium261g00003 1534 Gene3D - 346 545 - -
Vium261g00003 1534 Gene3D Helix hairpin bin 963 1013 - -
Vium261g00003 1534 Coils Coil 421 441 - -
Vium261g00003 1534 FunFam DNA polymerase 1131 1317 - -
Vium261g00003 1534 MobiDBLite consensus disorder prediction 1 57 - -
Vium261g00003 1534 FunFam DNA polymerase 958 1014 - -
Vium261g00003 1534 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1533 - -
Vium261g00003 1534 Pfam DNA Polymerase alpha zinc finger 1326 1530 IPR015088 GO:0003887|GO:0006260
Vium261g00003 1534 MobiDBLite consensus disorder prediction 74 133 - -
Vium261g00003 1534 Gene3D - 559 875 IPR036397 GO:0003676
Vium261g00003 1534 FunFam DNA polymerase 1326 1520 - -
Vium261g00003 1534 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Vium261g00003 1534 MobiDBLite consensus disorder prediction 875 900 - -
Vium261g00003 1534 SMART polmehr3 559 1067 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vium261g00003 1534 SUPERFAMILY Ribonuclease H-like 447 840 IPR012337 -
Vium261g00003 1534 Coils Coil 1067 1101 - -
Vium261g00003 1534 CDD DNA_polB_alpha_exo 559 810 - -
Vium261g00003 1534 Gene3D - 1131 1318 IPR042087 -
Vium261g00003 1534 MobiDBLite consensus disorder prediction 1 36 - -
Vium261g00003 1534 SUPERFAMILY DNA/RNA polymerases 891 1303 IPR043502 -
Vium261g00003 1534 Pfam DNA polymerase family B, exonuclease domain 376 752 IPR006133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium261g00003 Vium-Chr261 13731 27806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium261g00003 2 1532 Core DNA Replication Machinery Family AT5G67100 60.616 0.0 1815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium261g00003 K02320 - gmx:100798779 2559.64