Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium261g00001 ATGAACTGGGTTCGCGGAGAATCACTCGGCAGTGGAACCTTCGCCACCGTCAACATCGTCGTCCCTGCAAACGGCTCCACTCGGTTCCCTTCTCCCGTCGCCGTCAAATCCTCTGATTCCGACAACGCGGGTTCGCTCCAACACGAAAAGGAGATATTCGATCGCCTTGGCTCTTCCCCTTACATCATCAAGTGTTTCGGCCACGATCACACCGTCGAGAACGGCGAGGAGTTCTACAACGTATTCCTCGAACGCGCCACCGAAGGGTCCCTCGCCGACCAGGTCAAGAAACACGGTGGAAGCCTCCCGGAGCCTTTCGTCCGGCGATGCACGAGGTCTATCGTGGAAGGGCTCAAACATATTCACGAGCAAGGTTTCGTTCACTGCGACGTGAAGCTTCAGAACGTTCTCGTTTTCGACGGCGAGGTGAAAATCGCGGACTTCGGGCTCGCCAAGGAGAAGGGGGAGAAACAAGGGAAGTGCGAGTTCAGGGGAACGCCGTTGTTTATGTCGCCGGAATCGGTGAACGACAATGAATATGAGCCGCCGGCGGATATTTGGGCCCTGGGATGCGCCGTCGTGGAGATGGTGACCGGAAAACCCGCGTGGGATGTTAGCAACGGTTCCAGTATTTGGTCATTGATGATTCGGATTGGAGTCGGAGAAGAATTGCCAAAGATTCCAGAAGAATTGTCGGAAGAGGGGAAGGACTTTTTGGAGAAATGCTTTGTTAAGGATTCCAAGAACAGGTGGAGCGCTGAGATGCATCTGAAGCACCCTTTCATCAAAGTTGACTCACTTTCGTACGAGAAAGTTCATCAACCGTTACCGTCGCCGTCGCCGAGGACCCACTTCGATTTTCCTGACTGGGCTTCCACCGTAATGGCTTCGCTCCCGTCGTCCCTGGATTTCGATGAGCACTCTGGGTGGTCGAATTCTCCGGAGAGTCGTCTCCGGCAGCTTGTCACCGACAAGACATCGGAGAATTGGTCAGAATCGGATGGCTGGATCAGCGTTAGGTGA 1023 0.5445 MNWVRGESLGSGTFATVNIVVPANGSTRFPSPVAVKSSDSDNAGSLQHEKEIFDRLGSSPYIIKCFGHDHTVENGEEFYNVFLERATEGSLADQVKKHGGSLPEPFVRRCTRSIVEGLKHIHEQGFVHCDVKLQNVLVFDGEVKIADFGLAKEKGEKQGKCEFRGTPLFMSPESVNDNEYEPPADIWALGCAVVEMVTGKPAWDVSNGSSIWSLMIRIGVGEELPKIPEELSEEGKDFLEKCFVKDSKNRWSAEMHLKHPFIKVDSLSYEKVHQPLPSPSPRTHFDFPDWASTVMASLPSSLDFDEHSGWSNSPESRLRQLVTDKTSENWSESDGWISVR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium261g00001 340 SMART serkin_6 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium261g00001 340 CDD STKc_MAPKKK 2 262 - -
Vium261g00001 340 ProSiteProfiles Protein kinase domain profile. 3 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium261g00001 340 SUPERFAMILY Protein kinase-like (PK-like) 3 301 IPR011009 -
Vium261g00001 340 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Vium261g00001 340 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 310 - -
Vium261g00001 340 Pfam Protein kinase domain 5 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium261g00001 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vium261g00001 340 Gene3D Transferase(Phosphotransferase) domain 1 93 284 - -
Vium261g00001 340 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Vium261g00001 340 FunFam Mitogen-activated protein kinase kinase kinase 17 2 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium261g00001 Vium-Chr261 3284 4576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium261g00001 1 340 MAP Kinase Kinase Kinase AT4G36950 52.907 2.04e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium261g00001 Pkinase 4.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium261g00001 - - gmx:100782937 520.39