Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2619g00010 ATGAATCATGTTGCATTTCTCTTCACAATAACGTTTTTTCTTCTTTGTTTTGATGGCAAGGCACAGCAAAATTACTCTGGGAATTCAATTCTCAGCTGCAAGAATGATGACAAAATGGGGCCTTCACCTTCATTCCTTTATACCTGCAATGGCCTCAACAAATCATGCATGGCCTTCTTAATCTTCAAATCAAGGCCTCCTTTTAACACCGTACTCACAGTTTCCAACCTCACATCATCAAACCCAGAAGAGCTTGCAAGAATCAATGGTGTAACTGTGCTCACAGAGTTCCCAACTGGGAAAGAAATGATTGTCCCTCTGAACTGTTCTTGTTTAAGTAGGGACTATTACCAAGCTGAAACTGAATATGTATTGGGGCAATCCCCAACGTATTTCACAGTGGCAAATAATACTTTTCAGGGTTTGACCACTTGTGATTCGCTCATGCGTGCTAATCCATATGGGGAATTTGATTTGCTTCCTGGCATGGAGTTGCACGTGCCACTCAGATGTGCTTGTCCAACAATGCATCAGGTCACGGACGGCACCAAGTATTTGCTGACATACTCGGTGAACTGGGGTGACAACATTACAAGCATTGCTACAAGATTCAGTGTAGCAGCAAGGAATGTGGTTGATGCCAATGGTTTTAACACACCAACAGAATCTCTTTTTCCCTTCACAACTGTTCTGATTCCTTTGCCAAGTGAACCTCTGAGTTCAATGACCAAAGTTGTTAGTGATCCACCAGATATGTCACCTCCTCTTGTTTGCAGCTCCATGAAGTGCAAGTCAAAGAGGAAATTCTACACTGCTATTGCCACCACAGTGGGTTCCATTGTGGTTCTGTGTGCTGTCCTTTATGGGGTTTTTCTGTTCAGAAAGAGATCTGCAAGGTTCGTTAAGAGAGGTGAAGAAGGTGAGAAAGCAAAGAGGTTATCTTCAGATGATATCCGTGGTGAGATAGCAATCATTGAGCATCACTCTAAAGTTTATGAGTTTGAGGAAATAAAGGAGGCCACAGAAATTTTTAGTTCAAAGAATAGAGTTAAAGGTTCAGTGTTTCGTGGGGTATTTGGTGAAGAGAAGAACATACTGGCTGTTAAAAAAATGAGAGGAGATGCATCCAAGGAAGTGAATTTGCTGAAAAGAATCAATCATTTCAACCTGATAAAGCTGCAGGGTTACTGTGAAAACGATGCTTGTTCTTATCTTGTTTATGAGTATATGGAAAATGGCTCTTTGAGAGAATGGCTAAGCAAAAACAGGACTACCGAGCACCAGATTTTGGCAAAGAGGATTTTGATTGCTCTGGATATTGCCAATGGTCTTCAGTATCTTCACAACTTCACGGAACCTTCCTATGTGCACAGGAACATAAACAGTGGAAACATTCTTCTAAACAAAGATCTGAGAGCCAAGATAGCAAATTTCGCACTTGCTGAAGAATCAGAAAGGAAAATAACTTCCAGTTGTGCCTTGTCAGATATGGAGAGTGGTTATATTGCTCCAGAGTATCATGAGGCAGGGATAGTCACCACCAAAATGGACGTTTATGCTTTTGGAGTGGTACTGTTGGAATTGATCACAAGTAAAGATTTTGTTACTATACCAGAAGAGAGAGAAGCAATGCTACATGTAGTCATAGTAAACTTCATTGGAAAGGAGAATGAAGAAGAGAAGGTGAGTTTGTTCGTTGATCCTAGCTTCACTGGAAACAATGAGAAAGTGTGTGCTCTCCAGCTAGTTAAATTAGGTCTAACCTGCTTGATTGAAGAAGCAGAAGAGAGGCCAAGCATGGTAGAGGTAGTCTCTAGCTTATTGAAAATATATGTAAGTTATATGGACCAAATATTACCACTTAGCATCAACAGTAGTCCCAGCATCCACAATAGTCTCAGCATGGAGATGTGA 1914 0.4096 MNHVAFLFTITFFLLCFDGKAQQNYSGNSILSCKNDDKMGPSPSFLYTCNGLNKSCMAFLIFKSRPPFNTVLTVSNLTSSNPEELARINGVTVLTEFPTGKEMIVPLNCSCLSRDYYQAETEYVLGQSPTYFTVANNTFQGLTTCDSLMRANPYGEFDLLPGMELHVPLRCACPTMHQVTDGTKYLLTYSVNWGDNITSIATRFSVAARNVVDANGFNTPTESLFPFTTVLIPLPSEPLSSMTKVVSDPPDMSPPLVCSSMKCKSKRKFYTAIATTVGSIVVLCAVLYGVFLFRKRSARFVKRGEEGEKAKRLSSDDIRGEIAIIEHHSKVYEFEEIKEATEIFSSKNRVKGSVFRGVFGEEKNILAVKKMRGDASKEVNLLKRINHFNLIKLQGYCENDACSYLVYEYMENGSLREWLSKNRTTEHQILAKRILIALDIANGLQYLHNFTEPSYVHRNINSGNILLNKDLRAKIANFALAEESERKITSSCALSDMESGYIAPEYHEAGIVTTKMDVYAFGVVLLELITSKDFVTIPEEREAMLHVVIVNFIGKENEEEKVSLFVDPSFTGNNEKVCALQLVKLGLTCLIEEAEERPSMVEVVSSLLKIYVSYMDQILPLSINSSPSIHNSLSMEM 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2619g00010 637 ProSiteProfiles Protein kinase domain profile. 295 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2619g00010 637 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 614 - -
Vium2619g00010 637 ProSiteProfiles LysM domain profile. 187 232 IPR018392 -
Vium2619g00010 637 Pfam Protein tyrosine and serine/threonine kinase 368 607 IPR001245 GO:0004672|GO:0006468
Vium2619g00010 637 Pfam LysM domain 189 233 IPR018392 -
Vium2619g00010 637 Gene3D LysM domain 176 244 IPR036779 -
Vium2619g00010 637 Gene3D Phosphorylase Kinase; domain 1 305 409 - -
Vium2619g00010 637 SUPERFAMILY Protein kinase-like (PK-like) 352 607 IPR011009 -
Vium2619g00010 637 FunFam PTI1-like tyrosine-protein kinase 3 410 618 - -
Vium2619g00010 637 Gene3D Transferase(Phosphotransferase) domain 1 410 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2619g00010 Vium-Chr2619 86622 88646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2619g00010 4 610 Receptor kinase-like Gene Family AT2G23770 36.435 4.10e-119 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vium2619g00010 PK_Tyr_Ser-Thr 6.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2619g00010 - - gmx:100806221 1011.13