Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium2616g00001 | ATGGCACGTGCCACTAACTGGCTATCGTTCTCCCTCTCCCCCATGGAAATGCTCCGAACCTCGGAACCTCAGTTCGTGCAATACGACGCCGCTTCTGCAACTAACTCGAATCACTACTTTCTCGATAACTTGTACACCAACGGGTGGGGAAACGGGAACCTCAAACCTCAGGTGCTGATGGACCAGAATCTGAACCAGAGCGACGTCAGTTTTGTCGAATCCTCCCAGTCCCAGTCCCAAAGCGTCAGCCATGCGCCACCGCCCAAGCTTGAGGACTTTCTCGGTGACTCCTCTGCGGTGATGCGCTATTCCGACAGCCAGACGGAGACTCAGGACTCTTCGCTGACTCACATGTATGACCACCACGGCTCTGCATATTTTGGTGACCAGCAGGATCTCAAGACCATTGCTGGATTTCAAGCTTTTTCTACCAACTCTGGCTCGGAGGTTGATGATTCCGCGTCCATTGGAAAAACACAACCCAGCGAGTTCGGGACTCACTCTATTGAGTCCTCTGGGAACGAGTTCGCCGCGTTTTCCGGTGGTCCCACCGGCACTCTCTCTCTGGCTGTGGCACAGAGCTCCGAGAAGGCGGTGGTGGCAGCAGATTCCGGTAGCTCGAAGAAGATCGTGGATACCTTCGGCCAGCGGACTTCTATTTACAGAGGTGTCACCAGACACCGATGGACAGGTAGATATGAAGCCCATCTATGGGACAACAGTTGCAGGAGGGAGGGTCAAGCCAGGAAAGGGCGTCAAGTTTATTTGGGTGGATACGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTGTGTCCAATTATTCAAAGGAATTGGAGGAGATGAAGCATGTAACGAAGCAAGAATTCATTGCATCACTGAGGAGGAAAAGTAGTGGGTTCTCTAGGGGAGCTTCCATATACAGAGGTGTCACAAGACATCATCAACAGGGAAGGTGGCAAGCAAGAATTGGCCGCGTAGCTGGAAACAAAGATCTGTACCTGGGAACATTCGCAACGGAAGAGGAGGCAGCGGAGGCATATGACATTGCAGCTATAAAGTTCAGAGGTGCAAACGCAGTAACAAATTTTGAGATGAATAGATACGATGTGGAAGCTATAATGAAGAGTGCTCTTCCAGTGGGTGGGGCAGCAAAACGCTTGAAGCTTTCCCTTGAATCGGAGCAGAAAGTTGGTGTGAGCAGCAGTCAGCAGAATCCACCGTGTGGAAACGTCAGTGGAAGCATAAATTTCTCGGCCATTCACCAGCCTGTTGCTTCGATCCCTTGTGGAATTCCCTTTGATTCTTCAACAGCATATTATCACCACAACCTTTTCCAACATTTTCATCCTACCAACGCTGCCACGGCAGTTTCCACCGTCACTTCGGGCAATGTAGCTGGGCTTACCGCACTTCCTCCACCGGCGACAACGGCAGCTGAGTTCTTTATTTGGCCTCACCAGTCTTATTATAATATGGCCAACTCAGACATTGAAGTCGTGTTTCACCATGGAGGGAAATTTGAGAATAATGGGACATTTGGATATCACTATGGTCAAACCACAACTTTAAAAATAGACCCTGATCGATGGAGTTATTTTGAAATATTAAGCATTCTAAAGGAGATGGGTTATAGGAATGTAAAGGACTTATGGTATTCATTGGGTCGTGGTCCTGTATTAGAAGATTGTTTGGAACCTTTATTAGATGACAAGGGTGCTTGTCATCTGATCAATATTGCTATGTTGAATGGTGAAGCTCACCTTTATGTTATACATAGGGTGTGTGAACCTGAGTATCTTCTGCAGTTGGAATACTTTTCTGAACNAATGCCGGGATATATGGAACGGGACTTTGGTGCATTTCTGGCTGTCATTCAACTTTTTGACTCTTGTACAGTTTATTTGGGTGGATACGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTGTGTCCAATTATTCAAAGGAATTGGAGGAGATGAAGCATGTAACGAAGCAAGAATTCATTGCATCACTGAGGAGGAAAAGTAGTGGGTTCTCTAGGGGAGCTTCCATATACAGAGGTGTCACAAGGCATCATCAACAGGGAAGGTGGCAAGCAAGAATTGGCCGCGTAGCTGGAAACAAAGATCTGTACCTGGGAACATTCGCAACGGAAGAGGAGGCAGCGGAGGCATATGACATTGCAGCTATAAAGTTCAGAGGTGCAAACGCAGTAACAAATTTTGAGATGAATAGATACGATGTGGAAGCTATAATGAAGAGTGCTCTTCCAGTGGGTGGGGCAGCAAAACGCTTGAAGCTTTCCCTTGAATCGGAGCAGAAAGTTGGTGTGAGCAGCAGTCAGCAGAATCCACCGTGTGGAAACGTCAGTGGAAGCATAAATTTCTCGGCCATTCACCAGCCTGTTGCTTCGATCCCTTGTGGAATTCCCTTTGATTCTTCAACAGCATATTATCACCACAACCTTTTCCAACATTTTCATCCTACCAACGCTGCCACGGCAGTTTCCACCGTCACTTCGGGCAATGTAGCTGGGCTTACCGCACTTCCTCCACCGGCGACAACGGCAGCTGAGTTCTTTATTTGGCCTCACCAGTCTTATTGA | 2703 | 0.4809 | MARATNWLSFSLSPMEMLRTSEPQFVQYDAASATNSNHYFLDNLYTNGWGNGNLKPQVLMDQNLNQSDVSFVESSQSQSQSVSHAPPPKLEDFLGDSSAVMRYSDSQTETQDSSLTHMYDHHGSAYFGDQQDLKTIAGFQAFSTNSGSEVDDSASIGKTQPSEFGTHSIESSGNEFAAFSGGPTGTLSLAVAQSSEKAVVAADSGSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYSKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSALPVGGAAKRLKLSLESEQKVGVSSSQQNPPCGNVSGSINFSAIHQPVASIPCGIPFDSSTAYYHHNLFQHFHPTNAATAVSTVTSGNVAGLTALPPPATTAAEFFIWPHQSYYNMANSDIEVVFHHGGKFENNGTFGYHYGQTTTLKIDPDRWSYFEILSILKEMGYRNVKDLWYSLGRGPVLEDCLEPLLDDKGACHLINIAMLNGEAHLYVIHRVCEPEYLLQLEYFSEXMPGYMERDFGAFLAVIQLFDSCTVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYSKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSALPVGGAAKRLKLSLESEQKVGVSSSQQNPPCGNVSGSINFSAIHQPVASIPCGIPFDSSTAYYHHNLFQHFHPTNAATAVSTVTSGNVAGLTALPPPATTAAEFFIWPHQSY | 900 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium2616g00001 | 900 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 80 | 419 | - | - | |
Vium2616g00001 | 900 | MobiDBLite | consensus disorder prediction | 150 | 169 | - | - | |
Vium2616g00001 | 900 | CDD | AP2 | 321 | 380 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | ProSiteProfiles | AP2/ERF domain profile. | 322 | 380 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | MobiDBLite | consensus disorder prediction | 100 | 118 | - | - | |
Vium2616g00001 | 900 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 219 | 288 | - | - | |
Vium2616g00001 | 900 | CDD | AP2 | 716 | 775 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | Pfam | AP2 domain | 220 | 278 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | Pfam | AP2 domain | 717 | 767 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | Pfam | AP2 domain | 322 | 372 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | PRINTS | Ethylene responsive element binding protein signature | 221 | 232 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | PRINTS | Ethylene responsive element binding protein signature | 362 | 382 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | SUPERFAMILY | DNA-binding domain | 716 | 776 | IPR016177 | GO:0003677 | |
Vium2616g00001 | 900 | ProSiteProfiles | AP2/ERF domain profile. | 625 | 681 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | SMART | rav1_2 | 717 | 781 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | SMART | rav1_2 | 322 | 386 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | SMART | rav1_2 | 628 | 687 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | SMART | rav1_2 | 220 | 292 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | CDD | AP2 | 219 | 288 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | FunFam | AP2-like ethylene-responsive transcription factor | 321 | 382 | - | - | |
Vium2616g00001 | 900 | ProSiteProfiles | AP2/ERF domain profile. | 220 | 286 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | SUPERFAMILY | DNA-binding domain | 626 | 683 | IPR016177 | GO:0003677 | |
Vium2616g00001 | 900 | ProSiteProfiles | AP2/ERF domain profile. | 717 | 775 | IPR001471 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | MobiDBLite | consensus disorder prediction | 71 | 85 | - | - | |
Vium2616g00001 | 900 | SUPERFAMILY | DNA-binding domain | 321 | 381 | IPR016177 | GO:0003677 | |
Vium2616g00001 | 900 | Gene3D | AP2/ERF domain | 322 | 382 | IPR036955 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | Gene3D | AP2/ERF domain | 628 | 683 | IPR036955 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | Gene3D | AP2/ERF domain | 717 | 777 | IPR036955 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | Gene3D | AP2/ERF domain | 220 | 288 | IPR036955 | GO:0003700|GO:0006355 | |
Vium2616g00001 | 900 | SUPERFAMILY | DNA-binding domain | 219 | 288 | IPR016177 | GO:0003677 | |
Vium2616g00001 | 900 | MobiDBLite | consensus disorder prediction | 71 | 121 | - | - | |
Vium2616g00001 | 900 | FunFam | AP2-like ethylene-responsive transcription factor | 716 | 777 | - | - | |
Vium2616g00001 | 900 | CDD | AP2 | 649 | 683 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium2616g00001 | Vium-Chr2616 | 35077 | 44741 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium2616g00001 | 649 | 900 | AP2-EREBP Transcription Factor Family | AT5G10510 | 63.574 | 3.32e-94 | 305 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-AP2 | Vium2616g00001 | AP2 | 2e-12 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium2616g00001 | K09285 | - | gmx:100777168 | 845.114 |