Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2616g00001 ATGGCACGTGCCACTAACTGGCTATCGTTCTCCCTCTCCCCCATGGAAATGCTCCGAACCTCGGAACCTCAGTTCGTGCAATACGACGCCGCTTCTGCAACTAACTCGAATCACTACTTTCTCGATAACTTGTACACCAACGGGTGGGGAAACGGGAACCTCAAACCTCAGGTGCTGATGGACCAGAATCTGAACCAGAGCGACGTCAGTTTTGTCGAATCCTCCCAGTCCCAGTCCCAAAGCGTCAGCCATGCGCCACCGCCCAAGCTTGAGGACTTTCTCGGTGACTCCTCTGCGGTGATGCGCTATTCCGACAGCCAGACGGAGACTCAGGACTCTTCGCTGACTCACATGTATGACCACCACGGCTCTGCATATTTTGGTGACCAGCAGGATCTCAAGACCATTGCTGGATTTCAAGCTTTTTCTACCAACTCTGGCTCGGAGGTTGATGATTCCGCGTCCATTGGAAAAACACAACCCAGCGAGTTCGGGACTCACTCTATTGAGTCCTCTGGGAACGAGTTCGCCGCGTTTTCCGGTGGTCCCACCGGCACTCTCTCTCTGGCTGTGGCACAGAGCTCCGAGAAGGCGGTGGTGGCAGCAGATTCCGGTAGCTCGAAGAAGATCGTGGATACCTTCGGCCAGCGGACTTCTATTTACAGAGGTGTCACCAGACACCGATGGACAGGTAGATATGAAGCCCATCTATGGGACAACAGTTGCAGGAGGGAGGGTCAAGCCAGGAAAGGGCGTCAAGTTTATTTGGGTGGATACGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTGTGTCCAATTATTCAAAGGAATTGGAGGAGATGAAGCATGTAACGAAGCAAGAATTCATTGCATCACTGAGGAGGAAAAGTAGTGGGTTCTCTAGGGGAGCTTCCATATACAGAGGTGTCACAAGACATCATCAACAGGGAAGGTGGCAAGCAAGAATTGGCCGCGTAGCTGGAAACAAAGATCTGTACCTGGGAACATTCGCAACGGAAGAGGAGGCAGCGGAGGCATATGACATTGCAGCTATAAAGTTCAGAGGTGCAAACGCAGTAACAAATTTTGAGATGAATAGATACGATGTGGAAGCTATAATGAAGAGTGCTCTTCCAGTGGGTGGGGCAGCAAAACGCTTGAAGCTTTCCCTTGAATCGGAGCAGAAAGTTGGTGTGAGCAGCAGTCAGCAGAATCCACCGTGTGGAAACGTCAGTGGAAGCATAAATTTCTCGGCCATTCACCAGCCTGTTGCTTCGATCCCTTGTGGAATTCCCTTTGATTCTTCAACAGCATATTATCACCACAACCTTTTCCAACATTTTCATCCTACCAACGCTGCCACGGCAGTTTCCACCGTCACTTCGGGCAATGTAGCTGGGCTTACCGCACTTCCTCCACCGGCGACAACGGCAGCTGAGTTCTTTATTTGGCCTCACCAGTCTTATTATAATATGGCCAACTCAGACATTGAAGTCGTGTTTCACCATGGAGGGAAATTTGAGAATAATGGGACATTTGGATATCACTATGGTCAAACCACAACTTTAAAAATAGACCCTGATCGATGGAGTTATTTTGAAATATTAAGCATTCTAAAGGAGATGGGTTATAGGAATGTAAAGGACTTATGGTATTCATTGGGTCGTGGTCCTGTATTAGAAGATTGTTTGGAACCTTTATTAGATGACAAGGGTGCTTGTCATCTGATCAATATTGCTATGTTGAATGGTGAAGCTCACCTTTATGTTATACATAGGGTGTGTGAACCTGAGTATCTTCTGCAGTTGGAATACTTTTCTGAACNAATGCCGGGATATATGGAACGGGACTTTGGTGCATTTCTGGCTGTCATTCAACTTTTTGACTCTTGTACAGTTTATTTGGGTGGATACGATAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACTGCTACCACCAACTTCCCTGTGTCCAATTATTCAAAGGAATTGGAGGAGATGAAGCATGTAACGAAGCAAGAATTCATTGCATCACTGAGGAGGAAAAGTAGTGGGTTCTCTAGGGGAGCTTCCATATACAGAGGTGTCACAAGGCATCATCAACAGGGAAGGTGGCAAGCAAGAATTGGCCGCGTAGCTGGAAACAAAGATCTGTACCTGGGAACATTCGCAACGGAAGAGGAGGCAGCGGAGGCATATGACATTGCAGCTATAAAGTTCAGAGGTGCAAACGCAGTAACAAATTTTGAGATGAATAGATACGATGTGGAAGCTATAATGAAGAGTGCTCTTCCAGTGGGTGGGGCAGCAAAACGCTTGAAGCTTTCCCTTGAATCGGAGCAGAAAGTTGGTGTGAGCAGCAGTCAGCAGAATCCACCGTGTGGAAACGTCAGTGGAAGCATAAATTTCTCGGCCATTCACCAGCCTGTTGCTTCGATCCCTTGTGGAATTCCCTTTGATTCTTCAACAGCATATTATCACCACAACCTTTTCCAACATTTTCATCCTACCAACGCTGCCACGGCAGTTTCCACCGTCACTTCGGGCAATGTAGCTGGGCTTACCGCACTTCCTCCACCGGCGACAACGGCAGCTGAGTTCTTTATTTGGCCTCACCAGTCTTATTGA 2703 0.4809 MARATNWLSFSLSPMEMLRTSEPQFVQYDAASATNSNHYFLDNLYTNGWGNGNLKPQVLMDQNLNQSDVSFVESSQSQSQSVSHAPPPKLEDFLGDSSAVMRYSDSQTETQDSSLTHMYDHHGSAYFGDQQDLKTIAGFQAFSTNSGSEVDDSASIGKTQPSEFGTHSIESSGNEFAAFSGGPTGTLSLAVAQSSEKAVVAADSGSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYSKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSALPVGGAAKRLKLSLESEQKVGVSSSQQNPPCGNVSGSINFSAIHQPVASIPCGIPFDSSTAYYHHNLFQHFHPTNAATAVSTVTSGNVAGLTALPPPATTAAEFFIWPHQSYYNMANSDIEVVFHHGGKFENNGTFGYHYGQTTTLKIDPDRWSYFEILSILKEMGYRNVKDLWYSLGRGPVLEDCLEPLLDDKGACHLINIAMLNGEAHLYVIHRVCEPEYLLQLEYFSEXMPGYMERDFGAFLAVIQLFDSCTVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYSKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSALPVGGAAKRLKLSLESEQKVGVSSSQQNPPCGNVSGSINFSAIHQPVASIPCGIPFDSSTAYYHHNLFQHFHPTNAATAVSTVTSGNVAGLTALPPPATTAAEFFIWPHQSY 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2616g00001 900 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 80 419 - -
Vium2616g00001 900 MobiDBLite consensus disorder prediction 150 169 - -
Vium2616g00001 900 CDD AP2 321 380 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 ProSiteProfiles AP2/ERF domain profile. 322 380 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 MobiDBLite consensus disorder prediction 100 118 - -
Vium2616g00001 900 FunFam AP2-like ethylene-responsive transcription factor ANT 219 288 - -
Vium2616g00001 900 CDD AP2 716 775 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 Pfam AP2 domain 220 278 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 Pfam AP2 domain 717 767 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 Pfam AP2 domain 322 372 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 PRINTS Ethylene responsive element binding protein signature 221 232 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 PRINTS Ethylene responsive element binding protein signature 362 382 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 SUPERFAMILY DNA-binding domain 716 776 IPR016177 GO:0003677
Vium2616g00001 900 ProSiteProfiles AP2/ERF domain profile. 625 681 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 SMART rav1_2 717 781 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 SMART rav1_2 322 386 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 SMART rav1_2 628 687 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 SMART rav1_2 220 292 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 CDD AP2 219 288 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 FunFam AP2-like ethylene-responsive transcription factor 321 382 - -
Vium2616g00001 900 ProSiteProfiles AP2/ERF domain profile. 220 286 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 SUPERFAMILY DNA-binding domain 626 683 IPR016177 GO:0003677
Vium2616g00001 900 ProSiteProfiles AP2/ERF domain profile. 717 775 IPR001471 GO:0003700|GO:0006355
Vium2616g00001 900 MobiDBLite consensus disorder prediction 71 85 - -
Vium2616g00001 900 SUPERFAMILY DNA-binding domain 321 381 IPR016177 GO:0003677
Vium2616g00001 900 Gene3D AP2/ERF domain 322 382 IPR036955 GO:0003700|GO:0006355
Vium2616g00001 900 Gene3D AP2/ERF domain 628 683 IPR036955 GO:0003700|GO:0006355
Vium2616g00001 900 Gene3D AP2/ERF domain 717 777 IPR036955 GO:0003700|GO:0006355
Vium2616g00001 900 Gene3D AP2/ERF domain 220 288 IPR036955 GO:0003700|GO:0006355
Vium2616g00001 900 SUPERFAMILY DNA-binding domain 219 288 IPR016177 GO:0003677
Vium2616g00001 900 MobiDBLite consensus disorder prediction 71 121 - -
Vium2616g00001 900 FunFam AP2-like ethylene-responsive transcription factor 716 777 - -
Vium2616g00001 900 CDD AP2 649 683 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2616g00001 Vium-Chr2616 35077 44741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2616g00001 649 900 AP2-EREBP Transcription Factor Family AT5G10510 63.574 3.32e-94 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vium2616g00001 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2616g00001 K09285 - gmx:100777168 845.114