Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2613g00005 ATGAACCACGACGACAAACTCACCATGGACCTGGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTCCTCGCGGTTGGTATCCCATGCAAGAGGCTGTTAGACACTGTGACAGTGAAGTGTGGCCACTGCAGCAACCTCTCCTTTCTGAGCACCAGACCCCCAAATTCTCAAAACCAAAGCATTGATCACACCCTCAGTCTCCAGGGGTTTTACAGTAATGCCAAAAAGGGACAAGCATCGTCTTCATCTTCCTCACCAACCACATCCAACGAGTCAGTGTCTCCCAAAGCAGCATCATTCGTTGTGAAACCACCTGAGAAAAAGCACCGTCTCCCATCTGCATACAATCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCTAACCCTGAGATCCCACATCGAGAAGCTTTCAGCGCTGCTGCGAAAAATTGGGCAAGGTTCATTCCAAATTCACCAACCAGTTCAGTTTCTGCAAGTAAAGTTAATGCAGATTGA 522 0.4808 MNHDDKLTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDHTLSLQGFYSNAKKGQASSSSSSPTTSNESVSPKAASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSVSASKVNAD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2613g00005 173 CDD HMG-box_SF 117 153 - -
Vium2613g00005 173 SUPERFAMILY HMG-box 100 154 IPR036910 -
Vium2613g00005 173 PANTHER PROTEIN YABBY 6-RELATED 14 163 IPR006780 GO:0007275
Vium2613g00005 173 MobiDBLite consensus disorder prediction 82 103 - -
Vium2613g00005 173 Pfam YABBY protein 14 156 IPR006780 GO:0007275
Vium2613g00005 173 FunFam Protein CRABS CLAW 89 160 - -
Vium2613g00005 173 Gene3D High mobility group box domain 85 160 IPR036910 -
Vium2613g00005 173 MobiDBLite consensus disorder prediction 82 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2613g00005 Vium-Chr2613 102242 104817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2613g00005 1 168 C2C2-YABBY Transcription Factor Family AT1G69180 63.953 6.72e-67 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vium2613g00005 YABBY 1.8e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2613g00005 K25796 - gmx:100819079 340.117