Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2613g00002 ATGCCTTCTAACGCCATCGTCCAATACAGCTCTTCTTCATCTCATGCAATTAACACATACGACGTATTTGTGAGCTTCCGTGGTGAAGACACGCGCAACAACTTTACTGGTTTTCTCTTTCAAGCTCTCCGCAGAAAAGGCATCCATGCCTTCAAAGATGATCAAGATTTAAAAAAAGGTGAATCCATTGCACCCGAGCTGCTGCAAGCCATTCAAGCCTCTCGACTTTTCATTATTGTCTTCTCAAACAACTATGCTTCCTCCATTTGGTGCTTGCGTGAACTGGCAGAGATTCGTAACTGCGCTCAAACTTCGGCAAGACGTGTTATACCTATATTTTATGATGTTGATCCTTCGGTGGTTCGCAAACAGAGTGGATGTTATGACATATCATTTGCACAACACGAATACAGATTCGGAGAAAATAAAGCCAAGATGGAGGAAGCTAAGAGATGGAGAGAAGCTCTCACGGAAGTGGCCAATCTCTCTGGTTGGGATATTCGAAATAAGCCACAATATGCGCAGATAGAAGAAATTGTTGAAAGCATAACAAATATTTTGGGTCCCAAAATTTCAAGTCTTCCAAAGGACGAACTAGTTGGGATAGAGTCTCGGGTTCAAGAATTAAAAGATCTTCTGTGTTGTGGATCACTTAATGATGTTCGAGTCGTTGGAATTAGTGGGATGGGTGGCATAGGAAAGACAAGTCTTGCTTGGACTTTATACGAAAGAATTTGTCATCAATATGATTTTCATTGTTTTATTGACGATGTAAGCAAAATTTATCGAGATTCTAGTTCGTTAGGTCTACAAAAACAGTTAATTTCACAGTCTCTAAACGAAAAAAATCTAGAGATTTGCAATGGTTTTGAAGGAACATGTTTGGTGTGGTCTAGGCTACACAATGCCAGGGCACTTATAGTTCTTGACAATGTTGATCAAGTTGAACAACTGAGGATGTTTACAGGGAATAGAGACACTTTGTTACGTGAATGCTTAGGTGAAGGGAGCAAAATCATCATAATTTCTAGGGATGAACATATATTAAGAACGCATGGAGTGGATGATGTTTATCAAGTGCAGCCGTTGAGTTGGGAAAATGCTGTCCAGTTATTCTGTAGAAATGCTTTGAAAGTTAATTATATTTTGAGCGATTACGAAAAGTTGGCCCGTGATGTACTATCACATGCTCAAGGACATCCTTTGGCTATTGAAGTAATTGGTTCATCTTTGTTTGGCCGAAGTGTGTCTCAATGGAAAAGTGCATTGGCTAGACTAAAAGAAAATAAAAGTAAAAGTATTATGGATGTTTTACGTATAAGTTTTGATGAGCTGGATGAAGAAGACAAAGAAACATTTTTGGATATTGCTTGCTTCTACAATGGGTATGAAGAAATATACGTGAAGGAAATTCTAAGTTTCCGAGGATTTCATCCTGAATATGGCATGCAAGTTCTTGTTGATAAATCACTGATAACCAATAACTATGGGAGGATATATATGCATAGCTTGCTAATGGATTTGGGAAGGAGTATTGTTCGAGAAAAATCACCTAAGGAGCCCAGGAAGTGGAGCAGGTTGTGGGACTACCAAGATTTCCACAATGTTATGTTACACAATCAGGAAATTGACAATCTTGAAGCCATAGTTGTAAAAAATGAAGAATGGATGTTTGGTAAAACAACAATGAAGGCAGATGGTCTGTCGAACATTAGACAGCTTAAGTTGCTTAAACTTGAGAACGTGAACTTTTCAGGAAGTCTCAATCATCTTTCGAATGAACTAGGATATCTTACTTGGAACAAATATCCTTTTAAATGTTTGCCTCCAAGTTTTCGGCCCGATATACTAGTTGAGTTAAAACTGAGATGGAGCAGTATTCAACGACTGTGGGAAGGCACAATGCTACTGCACAATTTGAAACGTTTGGATCTGTCTTACTCCAAAGATTTAATTGAGATGCCAGATGTTGGAGAGGCCCTAAATCTTGAAAGGGTAGATCTTGAAGGATGCATAAAGCTCCAAAAAATCAATCCATCGATCGGTCTTTTGAGAAGGCTTGCCATTTTGAATTTGAAAAACTGCAAAGAGTTAGTGAGCTTACCAAGGAGCATATTTGGCCTGAACTGTCTTGAATATCTAAGTATCTCTGGGTGTTCAAAACTTTATAACAATCAGTTATTTGATGAACCAAGGAATACAGAGTATTTGAAGAAGCTTTATTTAGTTGAAGCTCCTATTCATCTCCGATCAACACCCTCTTTCATAAAAGAAATGCTTTCGTGGCCTTCAGATTTGTTGTATTTGAGATCACAAAGTAGCTGTTTGTTGCCGTCCTCTCCCAGTCACCCTTGTTTGCGTGAACTCGATCTAAGCTTCTGTAACTTGGTTCAAATTCCTGATGCCATTGGAAAGCTACATTGCTTAGAGAAGCTAAATTTGAAGGGAAACAATTTTACTACACTTCCCAACCTCAAGGACCTTTTCAAACTGTATTATTTAAACTTACAGCATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACGAACACACTTGCCCTCAAAAGTGTACATGCTACCATTCCCATATTCACCTTCTATCCTTGGACGTTTAGTAGAGGACGATGAAGACAAGGCAGGATTAATCATCTTCAACTGCCCAGAATTAGTTGACAGGGAACGCTGCTCAAGCATGAGTATTTCATGGATGATACAAATTGTTCAGGCGAACCATCAATACGGGAGTCTTACATCCACCACAATTGGTCCAGATGTTGAAAGTATTATCCCTGGAAGTGAAATACCCGAGTGGTTCAACAATCAGTTTCAGAGCCGGTTAAATTTAATAGAGATTAATTCCTCTCCCGTCGAAAATGACAATGATTGGATTGGTGTTGTGTGCTGTGTAATATTCGGTAGAGGCAACGAAATGGAAATGAGATATCCAAGACCATATTATCCAAGACCAGATAATCCCATTAAAAAACCTCCACTCGATTTGAGAAGAGATCCAACCATGGAGCTGTCAGATCACATGTGGCTATTTTATTTCTCCCGGAAGCAGTTCATTGAACAACGTGATTGGCTTGGCTTGAGATTTATCATACCGGAGATGAAAAAATTCCGTTATGCTGTGTATGTCAAGAAATATGGGTATCGCTGGGTATATGAGCAAGATCTAATTCTGTGA 3195 0.3909 MPSNAIVQYSSSSSHAINTYDVFVSFRGEDTRNNFTGFLFQALRRKGIHAFKDDQDLKKGESIAPELLQAIQASRLFIIVFSNNYASSIWCLRELAEIRNCAQTSARRVIPIFYDVDPSVVRKQSGCYDISFAQHEYRFGENKAKMEEAKRWREALTEVANLSGWDIRNKPQYAQIEEIVESITNILGPKISSLPKDELVGIESRVQELKDLLCCGSLNDVRVVGISGMGGIGKTSLAWTLYERICHQYDFHCFIDDVSKIYRDSSSLGLQKQLISQSLNEKNLEICNGFEGTCLVWSRLHNARALIVLDNVDQVEQLRMFTGNRDTLLRECLGEGSKIIIISRDEHILRTHGVDDVYQVQPLSWENAVQLFCRNALKVNYILSDYEKLARDVLSHAQGHPLAIEVIGSSLFGRSVSQWKSALARLKENKSKSIMDVLRISFDELDEEDKETFLDIACFYNGYEEIYVKEILSFRGFHPEYGMQVLVDKSLITNNYGRIYMHSLLMDLGRSIVREKSPKEPRKWSRLWDYQDFHNVMLHNQEIDNLEAIVVKNEEWMFGKTTMKADGLSNIRQLKLLKLENVNFSGSLNHLSNELGYLTWNKYPFKCLPPSFRPDILVELKLRWSSIQRLWEGTMLLHNLKRLDLSYSKDLIEMPDVGEALNLERVDLEGCIKLQKINPSIGLLRRLAILNLKNCKELVSLPRSIFGLNCLEYLSISGCSKLYNNQLFDEPRNTEYLKKLYLVEAPIHLRSTPSFIKEMLSWPSDLLYLRSQSSCLLPSSPSHPCLRELDLSFCNLVQIPDAIGKLHCLEKLNLKGNNFTTLPNLKDLFKLYYLNLQHCKRLKYLPDLPSRTHLPSKVYMLPFPYSPSILGRLVEDDEDKAGLIIFNCPELVDRERCSSMSISWMIQIVQANHQYGSLTSTTIGPDVESIIPGSEIPEWFNNQFQSRLNLIEINSSPVENDNDWIGVVCCVIFGRGNEMEMRYPRPYYPRPDNPIKKPPLDLRRDPTMELSDHMWLFYFSRKQFIEQRDWLGLRFIIPEMKKFRYAVYVKKYGYRWVYEQDLIL 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2613g00002 1064 ProSiteProfiles Leucine-rich repeat profile. 808 829 IPR001611 GO:0005515
Vium2613g00002 1064 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 165 IPR035897 -
Vium2613g00002 1064 Gene3D - 17 190 IPR035897 -
Vium2613g00002 1064 SUPERFAMILY L domain-like 501 854 - -
Vium2613g00002 1064 Gene3D Ribonuclease Inhibitor 765 860 IPR032675 -
Vium2613g00002 1064 Pfam C-JID domain 931 1062 IPR045344 -
Vium2613g00002 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 456 IPR027417 -
Vium2613g00002 1064 ProSiteProfiles TIR domain profile. 18 187 IPR000157 GO:0007165
Vium2613g00002 1064 PRINTS Disease resistance protein signature 223 238 - -
Vium2613g00002 1064 PRINTS Disease resistance protein signature 397 411 - -
Vium2613g00002 1064 PRINTS Disease resistance protein signature 635 651 - -
Vium2613g00002 1064 PRINTS Disease resistance protein signature 299 313 - -
Vium2613g00002 1064 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 722 IPR044974 GO:0006952
Vium2613g00002 1064 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 188 - -
Vium2613g00002 1064 Pfam NB-ARC domain 204 436 IPR002182 GO:0043531
Vium2613g00002 1064 Pfam TIR domain 20 200 IPR000157 GO:0007165
Vium2613g00002 1064 Gene3D - 191 356 IPR027417 -
Vium2613g00002 1064 Gene3D - 363 446 IPR042197 -
Vium2613g00002 1064 Gene3D Ribonuclease Inhibitor 560 741 IPR032675 -
Vium2613g00002 1064 SMART till_3 19 162 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2613g00002 Vium-Chr2613 13899 18044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2613g00002 20 875 WRKY Transcription Factor Family AT4G12020 29.299 3.73e-84 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2613g00002 - - pvu:PHAVU_010G055200g 1356.27