Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2613g00001 ATGCTCAGCTCGAGGCAATCCTTGTACATCTCTTCCTCTTCTTCTCCTTCTTCTTCTTCATTGTTTTGTATCATTCTCCTCCAACTTACTTTTCTCTATGGCATTGCCTTCTCTGCAAATCACGAAGCTTCAACTCTCTTCTCTTGGCTCCATGCTTCTGCATCACCACCTCCTCCTTCTTTCTCCAACTGGAACATTCTTCATTCCAATCCATGCAACTGGACATTCATAACATGCTCCTCACTAGGCTTTGTCACTGAAATCAACATACAATCCATCCCTCTAGAGCTTCCTATACTTTCCAACCTCTCTTCATTTCACTCTCTTCAAAAGCTTGTCTTATCTGATTCCAATCTAACTGGAACCATCCCTTCAGACATTGGTGATTGCTCTTCCCTCACTGTCATTGACCTCAGCTCCAACAATCTTGTTGGTTCAATTCCTGCAAGCATTGGAAAGCTCCAGAAACTTCAGAACTTGTCTTTGAACTCTAACCAGTTTACTGGAAGGATCCCTGTGGAGTTAAGCAACTGCATTGTTTTAAAAAATCTACTCCTTTTTGACAATCAGATAAGTGGGACTATCCCACCTGAGCTGGGGAAGTTGTCACAACTTGAGTCCCTAAGAGCAGGAGGGAACAAAGACATAGTTGGGAAGATTCCTGAAGAGCTAGGAGAATGCAGCAATTTGACAGTTTTGGGGCTGGCTGATACCAGAGTATCTGGTTCTTTGCCTGCTTCTTTGGGTAAGCTCACAAAGCTTCAGACTTTGTCCATCTATACCACCATGCTGTCCGGTGAAATTCCACCGGAGTTAGGTAACTGTTCTGAGCTTGTTAATTTGTTCTTGTATGAAAATAGCTTATCAGGGTCTATTCCATCTGAGCTTGGCAAGCTCAAGAAGCTGGAACAGTTGTTTTTCTGGCAGAATGGTCTTTTGGGGGCTATCCCAGAAGAGATTGGTAACTGTACAAGCTTGAGAAAATTTGATTTCTCCTTAAATTCTCTATCTGGGACCATACCTGTATCTTTGGGGGGTCTCTTGAATCTAGAGGAGTTTATGATTAGTGATAACAATGTGTCTGGTTCAATACCTTCCAGTCTTTCAAATGCTAAAAATCTTCAACAGTTGCAAGTTGACACAAACCAGCTCTCAGGCTTAATTCCTCCAGAGCTTGGTCAGCTGTCAAACCTCATGGTGTTCTTAGCTTGGCAGAACCAGCTTGAGGGAAGCATTCCCTCCACTTTGGGGAACTGCAGTAATCTCCAAGCACTGGACTTGTCACGCAATGCACTCACTGGTAGTATTCCCTTTGGCCTATTCCAGCTCCAAAACCTCACGAAACTGCTTCTGATTTCCAATGACATATCAGGTTTCATACCAAATGAAATAGGCAGTTGCAGCTCCCTTATAAGGTTGAGGCTTGGAAACAACAGGATTACTGGTAGCATTCCCAAGACAATAGGAAACCTGAAGAGCTTGAACTTTTTAGACCTCTCTGGGAACCGCCTCTCCGGTCCAGTGCCTGATGAGATTGGAAGCTGCTCTGAACTGCAAATGATAGACTTAAGCAGCAACAACTTAGAAGGTCCTCTGCCTAATTATTTATCTTCACTATCAGCAGTTCAGGTTTTGGATGCATCTTCCAACAGGTTTTCTGGTCCTTTACCAGCAAGTTTGGGCCGTCTTGTTTCTCTGAGTAAGCTAATCCTAAGCAATAACTTGTTTTCTGGACCTATTCCTGCATCGTTGAGTCTATGTTCAAATCTCCAGCTGCTTGATCTTAGCAGCAACAACCTCAGTGGAAACATACCAGCTGAGCTTGGCCGGATTGAGACTCTAGAAATTGCTCTTAATCTTAGTTGCAATTCACTACGTGGAATAATTCCAGCTCAGATATCTTCTCTTAACAAGCTTTCCATATTGGACCTCTCACACAACCAGTTGGAAGGAGATTTGAAACCTCTTGCTGAGTTAGACAACCTTGTCTCACTCAATGTTTCTTACAACAAATTTTCTGGCTGTCTTCCAGATAACAAGCTTTTCAGGCAGTTGACATCAAAAGACTTCACTGAAAATCAAGGGCTCTCATGCTTTGTGAAGGATTCTAGCAAGACTGATATGTCACTGAACGGAAATGAAGTAAGGAAATCGCAAAGGCTTAAGCTAGCCATTGGATTGCTGATAGCCTTGACAGTGATAATGATCGTTATGGGGATAACTGCTGTCATCAAAGCAAGGAGAGTTATTAGAGATGATGATTCAGAACTGGGTGACTCATGGCCATGGCAGTTCATACCATTTCAGAAGCTAAACTTTTCAGTGGAACAAATACTGAGATGCTTAGTTGATAGAAATATTATTGGAAAGGGATGTTCTGGTGTTGTATATAGAGCTGAAATGGACAATGGTGAAGTGATTGCTGTGAAGAAATTGTGGCCAACAACTATTAACGCAGAAGAGGCATTTAAGGAAGAAAAAAGTGGAGTTCGTGATTCATTCTCAGCTGAGGTCAAGACCCTTGGCTCAATCCGTCATAAGAACATTGTCAGATTCTTGGGGTGCTGCTGGAACAGACAAACAAGATTGCTTATTTTCGATTACATGCCGAATGGAAGTTTGAGTAGTCTACTTCATGAGAGGAGTGGAAATTCTCTGGAATGGGAACTTAGGTACAGAATCTTGTTAGGTGCTGCAGAAGGCCTTGCATATCTACATCATGACTGTGTCCCTCCTATAGTCCACAGAGATATTAAAGCCAATAATATCCTCATTGGCCTTGAATTTGAACCTTACATTGCTGACTTTGGCTTGGCTAAACTCGTTGATGATGGTGATTTTGGTCGTTCTTCCAATACAGTTGCTGGTTCCTACGGATATATTGCTCCAGAATATGGCTATATGATGAAGATCACAGAGAAGAGTGATGTTTACAGCTATGGAGTAGTGTTGTTAGAAGTCTTGACAGGTAAGCAACCAATTGATCCAACCATACCAGATGGTGTACATGTTGTTGATTGGGTGAGACAGAAAAAGGGTCTAGAAGTGCTTGATCCCAGCTTACTCTCTAGACCAGAATCAGAGATAGAGGAAATGATGCAGGCATTGGGAATAGCATTATTGTGTGTGAACTCATCTCCTGATGAAAGGCCAACAATGAGAGATATCGCGGCTATGCTGAAGGAGATAAAGCATGAAAGGGAGGAGTATGCAAAATTTGATGTGCTTCTAAAAGGGTCCCCTGCAAATGGTGCATCTGGGAATAAAAACTCTGGTGGAGTTCTGCCAACAGCTTCTTCATCAGTACCAGTCATGCAAACTTTGAAAACAAAAAGCAATAACTCAAGCTTCTCTGTGTCTTCTCTGCTGCATTCATCTTCAAGTGTCAAGATGGGTTCCAAATGA 3405 0.4238 MLSSRQSLYISSSSSPSSSSLFCIILLQLTFLYGIAFSANHEASTLFSWLHASASPPPPSFSNWNILHSNPCNWTFITCSSLGFVTEINIQSIPLELPILSNLSSFHSLQKLVLSDSNLTGTIPSDIGDCSSLTVIDLSSNNLVGSIPASIGKLQKLQNLSLNSNQFTGRIPVELSNCIVLKNLLLFDNQISGTIPPELGKLSQLESLRAGGNKDIVGKIPEELGECSNLTVLGLADTRVSGSLPASLGKLTKLQTLSIYTTMLSGEIPPELGNCSELVNLFLYENSLSGSIPSELGKLKKLEQLFFWQNGLLGAIPEEIGNCTSLRKFDFSLNSLSGTIPVSLGGLLNLEEFMISDNNVSGSIPSSLSNAKNLQQLQVDTNQLSGLIPPELGQLSNLMVFLAWQNQLEGSIPSTLGNCSNLQALDLSRNALTGSIPFGLFQLQNLTKLLLISNDISGFIPNEIGSCSSLIRLRLGNNRITGSIPKTIGNLKSLNFLDLSGNRLSGPVPDEIGSCSELQMIDLSSNNLEGPLPNYLSSLSAVQVLDASSNRFSGPLPASLGRLVSLSKLILSNNLFSGPIPASLSLCSNLQLLDLSSNNLSGNIPAELGRIETLEIALNLSCNSLRGIIPAQISSLNKLSILDLSHNQLEGDLKPLAELDNLVSLNVSYNKFSGCLPDNKLFRQLTSKDFTENQGLSCFVKDSSKTDMSLNGNEVRKSQRLKLAIGLLIALTVIMIVMGITAVIKARRVIRDDDSELGDSWPWQFIPFQKLNFSVEQILRCLVDRNIIGKGCSGVVYRAEMDNGEVIAVKKLWPTTINAEEAFKEEKSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRQTRLLIFDYMPNGSLSSLLHERSGNSLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGVHVVDWVRQKKGLEVLDPSLLSRPESEIEEMMQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSPANGASGNKNSGGVLPTASSSVPVMQTLKTKSNNSSFSVSSLLHSSSSVKMGSK 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2613g00001 1134 ProSitePatterns Protein kinases ATP-binding region signature. 788 811 IPR017441 GO:0005524
Vium2613g00001 1134 Gene3D Transferase(Phosphotransferase) domain 1 869 1078 - -
Vium2613g00001 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 913 925 IPR008271 GO:0004672|GO:0006468
Vium2613g00001 1134 SUPERFAMILY RNI-like 111 504 - -
Vium2613g00001 1134 Gene3D Ribonuclease Inhibitor 617 707 IPR032675 -
Vium2613g00001 1134 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 765 868 - -
Vium2613g00001 1134 Gene3D Ribonuclease Inhibitor 42 153 IPR032675 -
Vium2613g00001 1134 SUPERFAMILY Protein kinase-like (PK-like) 760 1061 IPR011009 -
Vium2613g00001 1134 PRINTS Leucine-rich repeat signature 636 649 - -
Vium2613g00001 1134 PRINTS Leucine-rich repeat signature 422 435 - -
Vium2613g00001 1134 Gene3D Ribonuclease Inhibitor 436 532 IPR032675 -
Vium2613g00001 1134 Gene3D Ribonuclease Inhibitor 154 245 IPR032675 -
Vium2613g00001 1134 Gene3D Ribonuclease Inhibitor 340 435 IPR032675 -
Vium2613g00001 1134 Gene3D Ribonuclease Inhibitor 533 616 IPR032675 -
Vium2613g00001 1134 FunFam LRR receptor-like serine/threonine-protein kinase 537 612 - -
Vium2613g00001 1134 PANTHER UNNAMED PRODUCT 309 997 - -
Vium2613g00001 1134 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 214 437 - -
Vium2613g00001 1134 SUPERFAMILY RNI-like 364 698 - -
Vium2613g00001 1134 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 869 1078 - -
Vium2613g00001 1134 ProSiteProfiles Protein kinase domain profile. 782 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2613g00001 1134 Pfam Leucine rich repeat 445 504 IPR001611 GO:0005515
Vium2613g00001 1134 Pfam Leucine rich repeat 108 167 IPR001611 GO:0005515
Vium2613g00001 1134 Pfam Leucine rich repeat 618 672 IPR001611 GO:0005515
Vium2613g00001 1134 MobiDBLite consensus disorder prediction 1105 1134 - -
Vium2613g00001 1134 FunFam Nuclear pore complex protein NUP107 39 196 - -
Vium2613g00001 1134 SMART LRR_typ_2 299 323 IPR003591 -
Vium2613g00001 1134 SMART LRR_typ_2 347 371 IPR003591 -
Vium2613g00001 1134 SMART LRR_typ_2 636 660 IPR003591 -
Vium2613g00001 1134 SMART LRR_typ_2 491 515 IPR003591 -
Vium2613g00001 1134 SMART LRR_typ_2 563 587 IPR003591 -
Vium2613g00001 1134 SMART LRR_typ_2 154 178 IPR003591 -
Vium2613g00001 1134 SMART LRR_typ_2 419 443 IPR003591 -
Vium2613g00001 1134 SMART LRR_typ_2 106 130 IPR003591 -
Vium2613g00001 1134 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 438 532 - -
Vium2613g00001 1134 FunFam Putative LRR receptor-like serine/threonine-protein kinase 617 702 - -
Vium2613g00001 1134 Gene3D Ribonuclease Inhibitor 246 339 IPR032675 -
Vium2613g00001 1134 ProSiteProfiles Leucine-rich repeat profile. 638 660 IPR001611 GO:0005515
Vium2613g00001 1134 Pfam Leucine rich repeat N-terminal domain 39 80 IPR013210 -
Vium2613g00001 1134 SMART serkin_6 782 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2613g00001 1134 Pfam Protein tyrosine and serine/threonine kinase 786 1059 IPR001245 GO:0004672|GO:0006468
Vium2613g00001 1134 Gene3D Phosphorylase Kinase; domain 1 768 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2613g00001 Vium-Chr2613 1938 6169 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2613g00001 37 1079 Receptor kinase-like Gene Family AT5G56040 49.387 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium2613g00001 PK_Tyr_Ser-Thr 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2613g00001 - - gmx:100818541 1930.22