Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2610g00076 ATGGATGGTCACGGCGGAGGGACGAGAGGGGAGGCGGAGCGCTGGCTGTACACGGCGAACAAGGTTTTAAGCGCACGTGACTTGCACGGGGCTCGCTCATTTGCGATTCGGGCCCGAGAGTCCGACCCGAGATACGAGCCCACCCAGCTTCTTCTCACGGTTATCGATACCCTCATGGCCGGCGAGGCCCGGATCAACGACCACCTCGACTGGTACGCCATCCTCCAAGTCCTCCGTTACACTCAGAACATCGACTACATCGCCGTCCAGTACCGTCGCCTCGCCACCCAGCTCGACCCTCACCACAACCCATTTGCCTTCGCCGCTCACGCCTTCACGCTCGTCAACGACGCCTGGTCCGTACTCTCTAACTCCACAAAGAAAGCCTTCTACGACAACCAACTCAGACTCCTCACTCAACCCCCACCCCCGCCTCCTCCTCCTCCGCCTCCTCCACCGCCGCCGCAACCTCCCGCTCCTCCGGTTACCTTCTTCCCGATTCAACCTCCGCAACCAAACTTAAACCCGAACCCGACCACGACCCCGTACCAAGTCCCTCAGCGGGAAAAAAGCCCTAGGGCTAGGGTGGAGGTGGAGGTGCCGAGTCAGGAGGACAATGCGAGCGAGTTGACTCGGGCGAGTGAGACGGAGAGCGAAGGGGCGAGTTTCTGGACCGCGTGCCCTTATTGTTACGTTATGTACGAGTATCCGAAGGTGTACGTGGATTGTACGTTGCGGTGTCAGAGTTGTCGGAGGGGGTTTCATGCGGTTGTGGTACGGTCGCCGCCGAAAGATGGTTTTGGCTCGTTTTGCAGTTGGGGTTTTTTCCCTGTGGGATTTTCTGGAGATTTTAGAGACATCAGCGGTTCTTCTTCGAAGTGGAACCCTTTTTCCCCTTTGATTCCTTGCGCTTTCAAAAGGGAGGTGCAGCAGAGTAGGAAGAACCAGAAGGCGCCTTATGTTTTCTACGACGATGACGCGTCTGCGGAGTTCGCGGAGGGTTCCGACACGACGAAGGATGATTCCGACGATGATGATTGGCATGGCGGGAATCAGAAGGGAATGGAGACGGTGGCGAAGAAGAGGACGAGGAAGAGGAAGAGGGGGAGGAAGAGAAGAAATGGTAATGGTGGTGATGTCAGGAGGGAACCGATTGAGAGGCCTAGGAGAGGCGTTGATAGTCATACGGGTGGTGATGAGGGGAATGTTAACGGAAATGTGGAGAATGGTGAGGTTGCGGATGGTGAAGGTGATGGTGTTGCGGCGGCGGCAGATTCTGGTAAGAAGGGTGCGTTGGGTGGTTCTCGGAGGAGGAGTGAGAGGAACTTGGGGAAGTTAGATTTGAATGTAGAGTTCAGCAATGAGGTGGAGGAGTCTTTGCATGAAGTGGATGAAGGGAATGAAAATGGGAATGGGAATGCTGAGGATAATATCGAAGGGATTGGATTTTTTGAAGGGCTGGACGAGTTCCTCAGTAGCTTGCCCATTCTGAATGCTGTTGCAGATGACAAGGTTAAGGGTCATTAG 1527 0.554 MDGHGGGTRGEAERWLYTANKVLSARDLHGARSFAIRARESDPRYEPTQLLLTVIDTLMAGEARINDHLDWYAILQVLRYTQNIDYIAVQYRRLATQLDPHHNPFAFAAHAFTLVNDAWSVLSNSTKKAFYDNQLRLLTQPPPPPPPPPPPPPPPQPPAPPVTFFPIQPPQPNLNPNPTTTPYQVPQREKSPRARVEVEVPSQEDNASELTRASETESEGASFWTACPYCYVMYEYPKVYVDCTLRCQSCRRGFHAVVVRSPPKDGFGSFCSWGFFPVGFSGDFRDISGSSSKWNPFSPLIPCAFKREVQQSRKNQKAPYVFYDDDASAEFAEGSDTTKDDSDDDDWHGGNQKGMETVAKKRTRKRKRGRKRRNGNGGDVRREPIERPRRGVDSHTGGDEGNVNGNVENGEVADGEGDGVAAAADSGKKGALGGSRRRSERNLGKLDLNVEFSNEVEESLHEVDEGNENGNGNAEDNIEGIGFFEGLDEFLSSLPILNAVADDKVKGH 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2610g00076 508 MobiDBLite consensus disorder prediction 138 179 - -
Vium2610g00076 508 CDD DnaJ 70 124 IPR001623 -
Vium2610g00076 508 MobiDBLite consensus disorder prediction 359 375 - -
Vium2610g00076 508 MobiDBLite consensus disorder prediction 136 215 - -
Vium2610g00076 508 ProSitePatterns Nt-dnaJ domain signature. 112 131 IPR018253 -
Vium2610g00076 508 MobiDBLite consensus disorder prediction 332 442 - -
Vium2610g00076 508 MobiDBLite consensus disorder prediction 456 477 - -
Vium2610g00076 508 SUPERFAMILY Chaperone J-domain 64 136 IPR036869 -
Vium2610g00076 508 MobiDBLite consensus disorder prediction 332 358 - -
Vium2610g00076 508 Pfam DnaJ domain 70 132 IPR001623 -
Vium2610g00076 508 Gene3D DnaJ domain 59 140 IPR036869 -
Vium2610g00076 508 SMART dnaj_3 69 127 IPR001623 -
Vium2610g00076 508 MobiDBLite consensus disorder prediction 376 396 - -
Vium2610g00076 508 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 377 - -
Vium2610g00076 508 ProSiteProfiles dnaJ domain profile. 70 135 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2610g00076 Vium-Chr2610 458568 460667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2610g00076 11 507 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 36.914 5.64e-91 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2610g00076 - - gmx:100778926 640.188