Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2610g00075 ATGGCAAGAAAGAAGATACCGATCAAGAAGATCGACAACATAAACGCGAGGCAAGTAACATTCTCGAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCATGAACTGTCAACTCTCTGTGATGCTGAGATTGCTCTCATAGTCTTTTCCGCAACCAGCAAGCTCTTCGAGTACGCCAGTTCGAGCATGCAACAAATAATTGAAAGGCGTAATCAGCATTCAGGTGTTCAAGGATCAAACATTGCATCCACTGGAAAACAGCTTGGAAGTAACTCTTTTGACATGCTGCACAAGGAAATAGAAGATAAGGCTCATGAACTGTGTCAGTTGAACGAACAAGACTTGCAAGGATTGACAGTACAAGAGTTGCAGAAACTGGAGGAACTTCTCCAAAAACGTTGGATCACTATTTCAAAAATTAAGGAAGAAAAAATGACACAAGAGATCAACAGTCTTAAAACAAAGGTAAATGCTCACACAGATTGCAAATCATGTCTGTCTTTGAGATATTATTCGTATTTCTGGTCAAATAAATTTGTACCTTAA 543 0.3923 MARKKIPIKKIDNINARQVTFSKRRKGLFKKAHELSTLCDAEIALIVFSATSKLFEYASSSMQQIIERRNQHSGVQGSNIASTGKQLGSNSFDMLHKEIEDKAHELCQLNEQDLQGLTVQELQKLEELLQKRWITISKIKEEKMTQEINSLKTKVNAHTDCKSCLSLRYYSYFWSNKFVP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2610g00075 180 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Vium2610g00075 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium2610g00075 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium2610g00075 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium2610g00075 180 FunFam Transcription factor, MADS-box 13 82 - -
Vium2610g00075 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium2610g00075 180 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium2610g00075 180 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vium2610g00075 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium2610g00075 180 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 136 - -
Vium2610g00075 180 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Vium2610g00075 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2610g00075 Vium-Chr2610 439929 448733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2610g00075 1 154 MADS-box Gene Family AT2G22540 51.282 1.06e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium2610g00075 SRF-TF 9.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2610g00075 - - vum:124831154 340.887