Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2610g00053 ATGATGTTCTTATTTCTTATGATCAGTTTTGCAAACCCACTTTCATTTCGTCACCAGGGATTTGAGTATAATGATATCAAGATTGAAGGAGATGCTATTTTGTCAGAATCAGAAATCCAACTCACTAAAACCACCAGGTATCAGAGCAATGCTTACAGTGTTGGGAGAGTCACTAGTTTTGAAAGATTGCACCTTTGGGACAACATCACAGGAAAACTGACCGATTTTACTACCCAATTTTCCTTTGTCATTTTCTCAAACGAGACTAGTTTTGGAGATGGCTTGGCTTTTTTCTTAGCAGATCCAGGGCTTCCTCTTTCGAATCAAATACAACAAGGAGGTGGTCTTGGTCTTCTGGATGGTAAACAGTTATTGAATTCAGCTAAGCATCCCTTTGTAGCTGTGGAGTTTGACACATTCCAAAATTTATGGGACCCACCTGGCACTCATGTAGGTATAAATTTCAACTCCATGAAATCTAACAAAACTGTTCCATGGTCCCTTGATATTAGGCAAATGAAAGCTTGTTATTGTGTGATTGAGTACAATGCAACTACTCACATTTTGAATGTTTCTTTCTCTGGAAACAATCTCAATGCCAAGCCAACAAAAAGATATATCTCATGCAATGTTGACCTGAGAGATTACCTACCAGAGTGGGTTATATTTGGTTTCTCAGCTGCTACAGGAATTATGTTTGAGTTGAACACAGTGCTGTCATGGTCATTCCATTCAACTTTACAAAGTAATCAGAATCTGTCAAATAAGATACCTCCAATTGCAGTCTCACCAAGCCCAAATCCTAGTCCTTCACCATTTTCCACTGACACTATTAGCCCTAAACAAGAGGAAAACAAAGGTTTATTGATGGGACTAGAAGTTGGGGTAGGCATAGCTGCAACTTTCCTTATTGTAGGGTTGGTTTGTGTTTTAATGTGGAAGAGGAGGGCTAGAGGAAAAAGAGAAGATTCAATTATTGATCTGAGCATGGATGATGAATTCCAAAAGGGCATTGGACCAAAAAGATTTTTCTATAAAGAATTGGCAAGTGCAACAAGAAACTTTGCAGAGTCACAAAAGATTGGACAAGGTGGTTTTGGGGGTGTGTATAAAGGCTATTTGAAAGAATTGAACACCAACGTTGCTATAAAGAGGATATCAAGAGAATCTAGACAAGGAGCAAAGGAATATGCAAGTGAAGTTAAGATCATCAGCAGACTAAGGCACAGGAATTTAGTGCAATTAATTGGTTGGTGCCACATGAAGAAAGATCTCCTTCTTATATACGAGTTCATGCAAAATGGTAGCTTAGATTCCCACCTATATAGTGGAAAAAGCATCTTGACATGGCAGATGAGGTACAACATTGCCATGGACTTGGCTCTGGCAGTGTTGTACCTTCATGAAGAATGGGAGCAGTGTGTGCTTCATAGGGACATTAAATCCAGCAACATTATGTTGGATTCAAATTTCAATGCTAAGCTTGGGGATTTTGGCTTAGCCAGGCTTGTTGATCATGAGAAAGGATCCCAAACTACAATTCTAGCAGGGACAAGAGGCTACATAGCCCCTGAATACTTCACTACAGGGAAGGCTAGGAAGGAATCTGATATATACAGTCTTGGGATTGTTTTACTGGAGTTAGCCACTGGAAGAAAACCAGTTGATCTCAATGCCATGGAAGGCCAAATAACCATATTTGAGTGGGCTTGGGAGCTCCACCAATTGGGAAAATTACTTGAAGTGGTTGACAAAAAGCTTGGAGGAGCATTTGATGAGGAACAGATGAAACGTTTAGTGATTGTTGGCCTTTGGTGTGCCAATCCAGATCATACATCCAGACCATCAGTAAGACAATTGATTCAAGTGCTTAAGTTTGAAGCTCCTTTGCCAGTTCTCCCACAAAAGTTGTCTGAGCCTTATTATCATTCTCCAACTATGAGTACAATATTTGCTTCAATCTCTTCTCCCCTCTCTGGCTACATGGTAGAACCAAATACAATGTAA 2007 0.3981 MMFLFLMISFANPLSFRHQGFEYNDIKIEGDAILSESEIQLTKTTRYQSNAYSVGRVTSFERLHLWDNITGKLTDFTTQFSFVIFSNETSFGDGLAFFLADPGLPLSNQIQQGGGLGLLDGKQLLNSAKHPFVAVEFDTFQNLWDPPGTHVGINFNSMKSNKTVPWSLDIRQMKACYCVIEYNATTHILNVSFSGNNLNAKPTKRYISCNVDLRDYLPEWVIFGFSAATGIMFELNTVLSWSFHSTLQSNQNLSNKIPPIAVSPSPNPSPSPFSTDTISPKQEENKGLLMGLEVGVGIAATFLIVGLVCVLMWKRRARGKREDSIIDLSMDDEFQKGIGPKRFFYKELASATRNFAESQKIGQGGFGGVYKGYLKELNTNVAIKRISRESRQGAKEYASEVKIISRLRHRNLVQLIGWCHMKKDLLLIYEFMQNGSLDSHLYSGKSILTWQMRYNIAMDLALAVLYLHEEWEQCVLHRDIKSSNIMLDSNFNAKLGDFGLARLVDHEKGSQTTILAGTRGYIAPEYFTTGKARKESDIYSLGIVLLELATGRKPVDLNAMEGQITIFEWAWELHQLGKLLEVVDKKLGGAFDEEQMKRLVIVGLWCANPDHTSRPSVRQLIQVLKFEAPLPVLPQKLSEPYYHSPTMSTIFASISSPLSGYMVEPNTM 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2610g00053 668 Pfam Legume lectin domain 14 254 IPR001220 GO:0030246
Vium2610g00053 668 SUPERFAMILY Concanavalin A-like lectins/glucanases 13 250 IPR013320 -
Vium2610g00053 668 Gene3D Phosphorylase Kinase; domain 1 340 431 - -
Vium2610g00053 668 PANTHER - 41 628 - -
Vium2610g00053 668 SMART serkin_6 355 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2610g00053 668 MobiDBLite consensus disorder prediction 261 280 - -
Vium2610g00053 668 ProSitePatterns Legume lectins alpha-chain signature. 217 226 IPR000985 -
Vium2610g00053 668 FunFam L-type lectin-domain containing receptor kinase IX.1 12 256 - -
Vium2610g00053 668 FunFam Lectin-domain containing receptor kinase A4.3 432 644 - -
Vium2610g00053 668 Pfam Protein kinase domain 356 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2610g00053 668 SUPERFAMILY Protein kinase-like (PK-like) 339 652 IPR011009 -
Vium2610g00053 668 CDD STKc_IRAK 361 625 - -
Vium2610g00053 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Vium2610g00053 668 FunFam L-type lectin-domain containing receptor kinase IX.1 340 431 - -
Vium2610g00053 668 Gene3D Transferase(Phosphotransferase) domain 1 432 644 - -
Vium2610g00053 668 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Vium2610g00053 668 CDD lectin_legume_LecRK_Arcelin_ConA 14 247 IPR001220 GO:0030246
Vium2610g00053 668 Gene3D - 12 259 - -
Vium2610g00053 668 ProSiteProfiles Protein kinase domain profile. 355 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2610g00053 668 ProSitePatterns Legume lectins beta-chain signature. 133 139 IPR019825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2610g00053 Vium-Chr2610 315218 317241 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2610g00053 1 643 Receptor kinase-like Gene Family AT5G10530 44.597 2.89e-173 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium2610g00053 Pkinase 8.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2610g00053 - - gmx:100814713 1060.44