LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2610g00050	ATGGGGAATGGAGGTTTTAGCACACTAACTCTTATCTTGTGCTATGCAATGGCAACCGTTTCATTCCTCCCTTCTACAAATACACTATCGTGTAGCTACCTCAAGTTCTGGGGAAATGATGCATGGCTGCAACTGCGAGGAGACGCAGAAGTTTCAGCTTCAGAAATCCAAGTCACATCTAACAGGGAAGGAAAGAACAACAGTTACAGTGCTGGACGTGTCACACCTGTTATAACGATGCATCTCTGGGATAAGAGTTCTGGGAAACTTGCAGACTTCACTACCCACTTTTCGTTCACTGTTTATTCAAATGAAATTCAGTTTGGAGATGGGTTTGCATTCTTTTTGGCGGATCCTGGGCTTCCCCTTTTGAATAACATCACGGAAGGTGGTGGTCTTGGCCTCGTGGATGGTGACAGAGTGTTGAACTCGACGCAACACTCATTTGTGGCAGTGGAGTTTGACACCTTCCAAAATCCATGGGACCCCGAAGACCCTCATGTAGGTATGAATTTCAACTCTATGAAGTCCAATGTAACTGCATCATGGTTAGCTATTATGTCACAAGATGTGGTTTACAATTGTAGCATTGAGTACAATTCCACCACTTTTTGTTTAACTGCTTCTTTCACTGGCTTGAATTACAAAAAATATGGTCGAATACAAAATAGCCTTTCGTACCATGTTGATTTGAGAAAGCACTTACCAGAGAGGGTCATGGTTGGCTTCTCCGCAGCTGCGGGATATTATTTTGAGGATCATATTCTGAAGTCATGGTCATTTAGTTCAGGCTTAGAAATAGAAATTGGTGATACTTCCGGTGATGATAATAAAGCAGTTGAGTGGGTAGGAATTGGGATAGGTTTGGTGGTTTTCTTAGGATTGGCTTGTTTTCTGATGTGGAGAAGGATAAAAGGGAAGGAAAAAGTGTTGGAAATTGATCTAAAAATGGACGATGAGTTCCAAAAGGGAATAGGACCCAAGAGGTTTCGATACAATGAACTGGAAAGTGCAACGAGTAAATTTTCAGAGTCGGAGAAGCTTGGACAAGGAGGCTTCGGTGGCGTGTATAAAGGTTTTCTGAAGGATTTAAACTCCTACGTTGCCATCAAGAGGGTATCGAGAGAATCAAAGCAGGGGGTAAAGGAATATGCTACTGAAGTCAAGATCATTAGCCAGTTGAGGCACAAGAATCTGGTGCAACTCCTTGGTTGGTGCCATAGAGAAAAAGATCTCCTTCTTGTCTATGAATTCATGCCAAACGGAAGCTTAGATTTCCATTTATATGGGAAGGGCTTCTTGACGTGGCCAGTGAGGTATAACATAGCTCTAGGCTTGGCTTCAGCGTTGCTATACCTGCAAGAAGAGTGGGAACAATGTGTTCTTCACAGGGACATAAAATCAAGCAACATAATGTTGGATTCAAGCTTCAACGCTAAGCTTGGTGATTTTGGTTTGGCTAGGTTGGTGGATCATGAAAAGGGGTCGCAAACAACGTTTATAGCTGGAACAAGGGGATACATTGCACCAGAATATGTGACTACAGGGAAAGCTTATAAGGAATCTGACATATACAGTTTTGGTGTTGTGTTATTGGAGATAGCTAGTGGAAGAAAAGCCATTGATCTAAAGGCACAGGATGGGAAGGTATCAATAGTAGAGTGGGTTTGGGAGATGTATGAATTGGGAGAGATATTGAAAGTTGCAGACCCAAAACTGTGTGGAGCGTTTGATGATGAACAGATGAAAAGGTTAGTGGGTATAGGTCTTTGGTGTGCTCATCCAAATTACAGATTCAGGCCTTCTGCCATGCAAGTCATTCAAATGCTTAAATTTGAAGCTGAATTGCCAACTCTGCCAGAGTGGCTACCTGTTCATAATTTCTATCCTTCAACAGTAAAAATAAATTTTTCATCGTCTTCAAACACTGTAACTATCCAGGAAATTTTGTAG	1953	0.4194	MGNGGFSTLTLILCYAMATVSFLPSTNTLSCSYLKFWGNDAWLQLRGDAEVSASEIQVTSNREGKNNSYSAGRVTPVITMHLWDKSSGKLADFTTHFSFTVYSNEIQFGDGFAFFLADPGLPLLNNITEGGGLGLVDGDRVLNSTQHSFVAVEFDTFQNPWDPEDPHVGMNFNSMKSNVTASWLAIMSQDVVYNCSIEYNSTTFCLTASFTGLNYKKYGRIQNSLSYHVDLRKHLPERVMVGFSAAAGYYFEDHILKSWSFSSGLEIEIGDTSGDDNKAVEWVGIGIGLVVFLGLACFLMWRRIKGKEKVLEIDLKMDDEFQKGIGPKRFRYNELESATSKFSESEKLGQGGFGGVYKGFLKDLNSYVAIKRVSRESKQGVKEYATEVKIISQLRHKNLVQLLGWCHREKDLLLVYEFMPNGSLDFHLYGKGFLTWPVRYNIALGLASALLYLQEEWEQCVLHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTFIAGTRGYIAPEYVTTGKAYKESDIYSFGVVLLEIASGRKAIDLKAQDGKVSIVEWVWEMYELGEILKVADPKLCGAFDDEQMKRLVGIGLWCAHPNYRFRPSAMQVIQMLKFEAELPTLPEWLPVHNFYPSTVKINFSSSSNTVTIQEIL	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2610g00050	650	Gene3D	-	27	273	-	-
	Vium2610g00050	650	ProSiteProfiles	Protein kinase domain profile.	342	629	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2610g00050	650	SMART	serkin_6	342	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium2610g00050	650	PANTHER	-	57	614	-	-
	Vium2610g00050	650	Pfam	Legume lectin domain	30	264	IPR001220	GO:0030246
	Vium2610g00050	650	CDD	STKc_IRAK	348	611	-	-
	Vium2610g00050	650	Gene3D	Phosphorylase Kinase; domain 1	327	418	-	-
	Vium2610g00050	650	ProSitePatterns	Protein kinases ATP-binding region signature.	348	371	IPR017441	GO:0005524
	Vium2610g00050	650	ProSitePatterns	Legume lectins beta-chain signature.	150	156	IPR019825	-
	Vium2610g00050	650	ProSitePatterns	Legume lectins alpha-chain signature.	235	244	IPR000985	-
	Vium2610g00050	650	SUPERFAMILY	Protein kinase-like (PK-like)	326	632	IPR011009	-
	Vium2610g00050	650	Gene3D	Transferase(Phosphotransferase) domain 1	419	630	-	-
	Vium2610g00050	650	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	461	473	IPR008271	GO:0004672\|GO:0006468
	Vium2610g00050	650	SUPERFAMILY	Concanavalin A-like lectins/glucanases	32	267	IPR013320	-
	Vium2610g00050	650	FunFam	L-type lectin-domain containing receptor kinase IX.1	327	418	-	-
	Vium2610g00050	650	CDD	lectin_legume_LecRK_Arcelin_ConA	29	265	IPR001220	GO:0030246
	Vium2610g00050	650	FunFam	Lectin-domain containing receptor kinase A4.3	419	630	-	-
	Vium2610g00050	650	Pfam	Protein kinase domain	343	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2610g00050	Vium-Chr2610	301814	303775	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2610g00050	12	629	Receptor kinase-like Gene Family	AT5G10530	45.526	6.95e-171	501

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vium2610g00050		Pkinase	1.5e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2610g00050	-		-	gmx:100780181	780.4