Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2610g00049 ATGGGGAGAGGGAAGATTGCGATTCGAAGGATCGACAACTCGACTAGCCGACAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAATTATCAATTCTTTGTGATGCTGAAGTTGGATTGATGGTGTTTTCCAGCACTGGAAAGCTTTATGACTATGCAAGCACAAGCATGAAATCTGTTTTTGAGCGCTACAACAAGCTAAAAGAGGAACATCATCACCTCATGAATCCGGCTTCAGAAGAAAAGTTTTGGCAGACAGAAGCAGCAAACTTGAGGAAACAGCTTCAGTATTTGCAAGAATGCCACAGGCAATTAATGGGTGAAGAACTTACGGGTTTGGGTATCAAAGAACTACAAAATCTGGAAAACCAACTGGAGATGAGTCTAAAGGGTGTTCGCATGAAAAAGGTATGA 429 0.4149 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKSVFERYNKLKEEHHHLMNPASEEKFWQTEAANLRKQLQYLQECHRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKV 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2610g00049 142 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vium2610g00049 142 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Vium2610g00049 142 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium2610g00049 142 Coils Coil 120 140 - -
Vium2610g00049 142 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium2610g00049 142 Pfam K-box region 83 141 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2610g00049 142 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium2610g00049 142 ProSiteProfiles K-box domain profile. 86 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2610g00049 142 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Vium2610g00049 142 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 140 - -
Vium2610g00049 142 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium2610g00049 142 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium2610g00049 142 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium2610g00049 142 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium2610g00049 142 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2610g00049 Vium-Chr2610 282772 295170 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2610g00049 1 141 MADS-box Gene Family AT4G37940 71.631 1.58e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium2610g00049 K-box 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2610g00049 K09264 - gmx:100805092 270.396