Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2610g00046 ATGGGGAGAGGGAAGATTGCGATTCGAAGGATCGACAACTCGACTAGCCGACAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAATTATCAATTCTTTGTGATGCTGAAGTTGGATTGATGGTGTTTTCCAGCACTGGAAAGCTTTATGACTATGCAAGCACAAGCATGAAATCTGTTTTTGAGCGCTACAACAAGCTAAAAGAGGAACATCATCACCTCATGAATCCGGCTTCAGAAGAAAAGTTTTGGCAGACAGAAGCAGCAAACTTGAGGAAACAGCTTCAGTATTTGCAAGAATGCCACAGGCAATTAATGGGTGAAGAACTTACGGGTTTGGGTATCAAAGAACTACAAAATCTGGAAAACCAACTGGAGATGAGTCTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTAACAAGTGAGATTAAAGAACTGCGCCAAAAGGGAAATCTCATTCATCAGGACAATGTTGAACTCTATCAAAAAATGGACCAGATTCAAAAGGAAAATGCAGAGCTACAGAAGAAGGTTTTCGGAAGCAGGAGTACAGGTGAAGAAAATGTGGCATCCAGTCCTTCTTACATGGTCAGAAATGAATATGAATTACGTCCACCAATCAGTCTCCAGCTAAGTCAGCCACAGACTCAATACAGTGAACCATCAGCCAAAGTAATGAAACTCGGGTATTCCCTCAAACTGATAATAAATCAAGTCAATATTTTTTGTTTTCAATTTCACAAGACACTAAAAACTTAA 777 0.3951 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKSVFERYNKLKEEHHHLMNPASEEKFWQTEAANLRKQLQYLQECHRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTSEIKELRQKGNLIHQDNVELYQKMDQIQKENAELQKKVFGSRSTGEENVASSPSYMVRNEYELRPPISLQLSQPQTQYSEPSAKVMKLGYSLKLIINQVNIFCFQFHKTLKT 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2610g00046 258 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2610g00046 258 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium2610g00046 258 Coils Coil 120 140 - -
Vium2610g00046 258 Coils Coil 163 183 - -
Vium2610g00046 258 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2610g00046 258 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Vium2610g00046 258 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium2610g00046 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium2610g00046 258 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Vium2610g00046 258 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium2610g00046 258 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vium2610g00046 258 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Vium2610g00046 258 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vium2610g00046 258 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium2610g00046 258 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium2610g00046 258 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2610g00046 Vium-Chr2610 282004 295147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2610g00046 1 240 MADS-box Gene Family AT2G14210 60.581 7.74e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium2610g00046 K-box 2.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2610g00046 K09264 - gmx:100808145 429.098