Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2610g00045 ATGGGGAGAGGGAAGATTGCGATTCGAAGGATCGACAACTCGACTAGCCGACAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTAGAGAATTATCAATTCTTTGTGATGCTGAAGTTGGATTGATGGTGTTTTCCAGCACTGGAAAGCTTTATGACTATGCAAGCACAAGCATGAAATCTGTTTTTGAGCGCTACAACAAGCTAAAAGAGGAACATCATCACCTCATGAATCCGGCTTCAGAAGAAAAGTTTTGGCAGACAGAAGCAGCAAACTTGAGGAAACAGCTTCAGTATTTGCAAGAATGCCACAGGCAATTAATGGGTGAAGAACTTACGGGTTTGGGTATCAAAGAACTACAAAATCTGGAAAACCAACTGGAGATGAGTCTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTAACAAGTGAGATTAAAGAACTGCGCCAAAAGGGAAATCTCATTCATCAGGACAATGTTGAACTCTATCAAAAAATGGACCAGATTCAAAAGGAAAATGCAGAGCTACAGAAGAAGGTTTTCGGAAGCAGGAGTACAGGTGAAGAAAATGTGGCATCCAGTCCTTCTTACATGGTCAGAAATGAATATGAATTACGTCCACCAATCAGTCTCCAGCTAAGTCAGCCACAGACTCAATACAGTGAACCATCAGCCAAAGTAATGAAACTCGGATTGCAGCTGCATTAG 720 0.4111 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKSVFERYNKLKEEHHHLMNPASEEKFWQTEAANLRKQLQYLQECHRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTSEIKELRQKGNLIHQDNVELYQKMDQIQKENAELQKKVFGSRSTGEENVASSPSYMVRNEYELRPPISLQLSQPQTQYSEPSAKVMKLGLQLH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2610g00045 239 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Vium2610g00045 239 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Vium2610g00045 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium2610g00045 239 Coils Coil 120 140 - -
Vium2610g00045 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Vium2610g00045 239 Coils Coil 163 183 - -
Vium2610g00045 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2610g00045 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium2610g00045 239 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2610g00045 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium2610g00045 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium2610g00045 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium2610g00045 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium2610g00045 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium2610g00045 239 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vium2610g00045 239 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2610g00045 Vium-Chr2610 281883 295147 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2610g00045 1 229 MADS-box Gene Family AT2G22630 57.642 6.57e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium2610g00045 K-box 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2610g00045 K09264 - gmx:100808145 420.239