Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2610g00036 ATGGAGAATTATTCATACCAATCATACCCTGATTCCGGCGACTCCTCTCCACGCTCCAGAGAGATCGACTTTGACAACCCTCCTCCTCCATGGGACGAACAACAACAACAACAGCAGAATTACAAGGTAAAGTTCATGTGCAGCTACGGCGGCAAGATCCACCCACGCTCCCACGACAACCAACTGTCATACGTCGGCGGCGAGACCAAGATCCTCGCCGTGGACCGCTCCATAAAGTTTGGAGCCCTGCTGGCCAAGCTCTCGGCCCTCTGCGAGGTGGCGCCACAAGAAAGCAACGGCAGCAGCCTCACCTTCAAGTACCAGCTCCCTGGCGAAGACCTCGACGCTCTTATCTCTGTCACCAACGACGACGACCTCGACCACATGATGCACGAGTACGATCGCCTCTACCGCGCTTCCGCTAGACCCGCCCGCATGCGATTATTCCTCTTTCTCGCCGATAATCTTCCTTCTCCGCTTCCTGCTTCCGCACCGCTCCAACCTGTGATTAAACCAAATAACGTTGATTTCCTCTTCGGTCTCGAGAAGGGCGCCGGTGTCGCCGTCGCGGCTCAGCCGGCTCAGATGCCGCCTGCGGCGGTCAAATTTCATGATCCGGTGCCGGAGCCCGTCGCGCCACCACCGGAGTACCAGTCTCGGCTGAATTTAAACCCTGTGGACAGGGTTTCGGCCTCGGATCCGAGTGCGATTCAGCGCCAGTTGCAGCAGTTGCAAATTGCGGAGAGCGAGCAAGGCGCGTACCGGAGGAAGAGCGAGGATAATTACCCTGCCGGTGATTATTACGTTCAGAAGCTGCCAGAGAAGTTCCCTCCGGCGAATTTACAGCAGAACGCCCAGGGATATTGGTCGGAAAAGCATGTTTCAGGCGAAGCATATCCACCGGCGGTGTCCGCTGCATCCGGTGGAGGAGATGCGCCGGTTTACATGATACCGGCGCCGGGGGCGTTCTATCATGCGCCGGTGGTGCGGCCTCCAGCCACCCAGGGGTACTACGCGGTGCAGCGAATGGCTTCAGATGGTTACCGTGAAGCGGCAGTGTACGGCGGTGTCACGCAGGCAAAAACGGCGGCTCAAGCAAGCTTGGCGCCAGGGCAGCAACCGGTTAAGACTCCCGCGTATACGGAAGGATTCGGTATGATGCGGCCCAGTGGGATAGTGGATAATACGGGTGCGCCGTACGCACAGGTAGCGTACGATAGTGCAGGTGGGAGACAGGTTTATTATACTGCACCGGGTGGCGTAGTGCACGCTCCTCCGTACCAAGGCGTTTTTCCACCGGTCACCTCTGATCTGAGGCAAACTGCGGTGACCATGGGTCAAGATGTTAAAGTGTTGAACAAAGTTACTCAAGGTTCAGTGTGA 1383 0.5727 MENYSYQSYPDSGDSSPRSREIDFDNPPPPWDEQQQQQQNYKVKFMCSYGGKIHPRSHDNQLSYVGGETKILAVDRSIKFGALLAKLSALCEVAPQESNGSSLTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPARMRLFLFLADNLPSPLPASAPLQPVIKPNNVDFLFGLEKGAGVAVAAQPAQMPPAAVKFHDPVPEPVAPPPEYQSRLNLNPVDRVSASDPSAIQRQLQQLQIAESEQGAYRRKSEDNYPAGDYYVQKLPEKFPPANLQQNAQGYWSEKHVSGEAYPPAVSAASGGGDAPVYMIPAPGAFYHAPVVRPPATQGYYAVQRMASDGYREAAVYGGVTQAKTAAQASLAPGQQPVKTPAYTEGFGMMRPSGIVDNTGAPYAQVAYDSAGGRQVYYTAPGGVVHAPPYQGVFPPVTSDLRQTAVTMGQDVKVLNKVTQGSV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2610g00036 460 Gene3D - 63 153 - -
Vium2610g00036 460 MobiDBLite consensus disorder prediction 1 15 - -
Vium2610g00036 460 MobiDBLite consensus disorder prediction 1 38 - -
Vium2610g00036 460 SMART PB1_new 57 153 IPR000270 GO:0005515
Vium2610g00036 460 PANTHER OS05G0427100 PROTEIN-RELATED 9 355 - -
Vium2610g00036 460 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 62 153 - -
Vium2610g00036 460 Pfam PB1 domain 58 151 IPR000270 GO:0005515
Vium2610g00036 460 CDD PB1_UP2 46 151 - -
Vium2610g00036 460 SUPERFAMILY CAD & PB1 domains 58 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2610g00036 Vium-Chr2610 193054 194785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2610g00036 41 151 MAP Kinase Kinase Kinase AT5G57610 46.847 3.76e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2610g00036 - - var:108341806 859.366