Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2610g00023 ATGAGGAGTTTCCATATGGAGATTTCATCAATCAGAGGGTTACCTGAACTGGGGATAATAGAGGATCCTAACTTTCTCCATCAGTGGCAGTTAAACCCAACTGATACAAGTAGTTTAACAGGAGCTGCTTTTGGTGAGAGTTTGCAGAAGCTCTCATTTTCTGGCAACTCAAACTTCAATCCCAAAGCATCCATGGAAACATCACCAAATGGAAATGAAAGACCAACAAAACAGCTCAGAAACAACAGCTGGAATGGCAAGAAAAGTCAGCATCAGACACCAGAGACACAATATGCTTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTACATAAATGAATTGGGACTAGGGAAGCCTAAGGTGGAAATGGCGTGTCCTAAAATTGATAACAGTACCCTTGCAGAGATGTTGATCTCTCAAGGAACCTTGGGAAATCAAAACTATCACTTCAAGGCCAACCAGGAGGCCATAAAGATTGAAACACGTCCAAAACATTCTCAACCTCAGGACCACATAATAGCTGAAAGGAAGCGGAGAGAGAAACTCAGCCAACGGTTCATTGCTCTATCTGCTCTCGTTCCTGGCCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCAGTGAAGTACTTGAAACAGTTGCAAGAGAAAGTGAGTACTCTTGAGGAGGAACAAAACAGAAAGAGAACTGTGGAATCTGTTGTAACAGTGAAGAAATCTCAGCTATCAGATGATGCTGAAGACTCTTCTAGTTCAGATACCGGTGGTACATTGGAAGAGGCACTACCTGAAATTGAAGCAAGATTTTGCGAAAGAAATGTTCTCATAAGAATACACTGTGAGAAGAAAAAAGGAATCATAGAGAAAACGATCAGCGAAATTGAGAAACTCCATTTAAAAGTTACCAATAGCAGTGCCTTGTCATTTGGGAGTTTCATTCTTGATATAACTATTATTGCTCAGATGGATATGGAATTTTGCATGACAGTGAAGGATCTCGTGAGAAGTTTACGCTCAGCTTTTTCATATTAG 1041 0.4025 MRSFHMEISSIRGLPELGIIEDPNFLHQWQLNPTDTSSLTGAAFGESLQKLSFSGNSNFNPKASMETSPNGNERPTKQLRNNSWNGKKSQHQTPETQYASCSNLLSFVNSNYINELGLGKPKVEMACPKIDNSTLAEMLISQGTLGNQNYHFKANQEAIKIETRPKHSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAVKYLKQLQEKVSTLEEEQNRKRTVESVVTVKKSQLSDDAEDSSSSDTGGTLEEALPEIEARFCERNVLIRIHCEKKKGIIEKTISEIEKLHLKVTNSSALSFGSFILDITIIAQMDMEFCMTVKDLVRSLRSAFSY 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2610g00023 346 CDD bHLH_AtNAI1_like 171 243 - -
Vium2610g00023 346 SMART finulus 174 223 IPR011598 GO:0046983
Vium2610g00023 346 Coils Coil 207 234 - -
Vium2610g00023 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Vium2610g00023 346 MobiDBLite consensus disorder prediction 55 96 - -
Vium2610g00023 346 Gene3D - 165 242 IPR036638 GO:0046983
Vium2610g00023 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 234 IPR036638 GO:0046983
Vium2610g00023 346 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Vium2610g00023 346 PANTHER BHLH TRANSCRIPTION FACTOR 38 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2610g00023 Vium-Chr2610 126023 129124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2610g00023 168 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 61.111 5.61e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2610g00023 HLH 9.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2610g00023 - - gmx:100798018 568.54