Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2610g00020 ATGGTCGCCGGAAGTAATTTCCGGTACTGCTCGGCGCCCATTATTCCCACTGCTGCCCTGTTATTCCTCTGCCTCGTTGCTTCTTCCCTCGGAGATGAACTTGAACCACTCATGAAGTTCAAGTCCTCCATACAAAGTTCAAATGTAACTGTTTTTAATTCATGGGCACAAGCAAGTTCTCCGTGCCTGTTCACTGGGATTGTATGCAACTCCAAAGGCTTTGTTTCAGAAATCAATCTTCCGGAGAAACAGCTGGAGGGTACTGTTCCCTTTGATTCACTTTGTGAGCTTCAATCGCTTGAGAAAATATCTTTGGGGTCTAACCACTTGCATGGAAGAATCAGTGAGGGGTTGATGAAGTGCACCAACTTGAAGCACTTGGATTTGGGTGTGAATTCATTCAATGGAGAAGTTCCTGATTTGTCGAGTTTGTACAAGTTGGAGTTCTTGAACTTAAACTTCAGTGGAATTTCAGGGGAGTTTCCATGGAAATCATTGGGAAATCTAACTAGTCTTCAGTTCCTGAGTCTTGGGGATAACCCGTTGAAGGAAGATCCTTTCCCTTTGGAGGTGTTAAAACTTGAAAAATTGTATTGGCTTTACCTCACAAATTGCAGCATCACTGGGAACATTCCATTGGGGATTGGGAATCTTACTCAGCTTCAGAATCTTGAGCTTTCTGACAACCACTTGTATGGTGAGATTCCTGCTGATATAGTTAAGCTTCGCAAGCTGTGGCAACTTGAGTTATATGATAACTATCTGAGTGGGAAAATCCCAGTTGGATTTGGAAACCTGACTAGTCTAGTTAACTTTGATGCTTCTTATAATCAACTTGAAGGTGATCTTTTTGAGGTAAGGTCCTTAAAAAACCTTGCATCCCTTCACCTTTTTGGGAACAAGTTGTCAGGAGAAATTCCAAAGGAGCTTGGAGATCTCAAGAATCTCACAGAGCTTTCTCTTTATGCTAACAACCTCACTGGTCCTCTTCCTCAAAAGCTTGGCTCTTGGCAAGGCATGCAATACGTTGATGTTTCAGACAATTTTCTTTCTGGCCCAATACCACCTTTCCTGTGCAAGAACAATCAAATCAATGAACTGTTACTCTTGAACAACAGCTTCAATGGAACAATACCAGAAACGTATGCAAAATGCACATCTTTGGTTCGTTTTCGTCTGAGCAGGAACTCACTTTCGGGTGTAGTTCCTTCAGGCATATGGGGCTTGCCAAATTTGGCTCTGTTTGATCTTGCAATGAACCAGTTTGAAGGTCCAGTGACATCTGATATAGCCAAAGCAGAATCTCTGGCTCAACTGTTGTTATCTAACAATAAGTTCGCAGGTGAGTTACCGATGGAAATCTCTGAAGCTTCTTCATTGGTGACAATTCAGCTAAGTTCAAATCAAATTTCTGGTAACATCCCAGAAAACATTGGAAAGTTGAAGAAACTAACCACTCTTACTTTAGATGGGAACAATCTTTCTGGTGTCGTACCAGATTCCATTGGTTCTTGTGTTTCTCTTAATGAGATAAACCTTGCTGGCAACTCTCTTTCTGGGGCTATACCAGGTAGCATCGGTTCTCTTCCAACTCTCAATTCATTGAACTTGTCCTCAAACAGGCTTTCTGGTGAAATTCCATCCAGTTTATCGTCTCTGAGACTTAGCCTTCTTGACTTATCAAACAATCAGTTGTTTGGTTCCATACCAGAACCTCTGTCTATTTCAGCCTTCAAAGACGGATTCATGGGAAATCCTGGCTTATGCAGCCAGACTTTGAAAGGTATCAGACCATGTTCAATGCAATCCAGAAGCTCCAGGAGACTCAGAAACCTTTTAGTCTGTTTCCTTGCTGCTGTAATGGTTCTGCTTGGAGCGTTTTTCCTCTTCACAAAACTAAGGCAGAATAAGTCTGAGAAGCCACTGAAGACTACTTCCTGGGATGTCAAGCAGTACCATGTGTTAAACTTCAATGAGAGTGAAATCGTTAACGGGATCTAGGCTGAGAATTTGATTGGCAAGGGAGGATCCGGCAATGTTTATCGGGTTGTGCTTAAAGGTGGGGCTGAATTAGCAGTGAAACACATATGGACTTCAAATGTAAGCGACAGGGGAAGTTGCAGGAGCACCTCAACTATGCTTAGAAGGAGTTCAAGGTCACCAGAATTTGATGCAGAGGTGGCCACTCTTAGTTCTATAAGGCATGTAAATGTTGTGAAGCTCTATTGTAGCATCACAAGTGAAGACAGCAGTTTGCTTGTTTATGAATTTTTACCAAATGGGTGTTTGTGGGACAGGTTGCACACCTGTAAAGAGAAGTCTAAGATGGGGTGGGAGGTTAGGTATGACATTGCATTGGGTGCTGCTAGAGGATTGGAGTACCTGCACCATGGGTGTGATAGACCAGTTATACATAGGGATGTCAAATCCAGTAACATATTGCTGGATGAAGAATGGAAGCCTAGGATTGCAGATTTTGGCCTTGCCAAGATTCTGAGTGGAGGAGCAGGCAATTGGACCAATGTCATTGCTGGAACACTTGGTTACTTACCTCCTGAGTATGCCTACACTTGTAAGGTGACGGAGAAGTGTGATGTTTACAGCTTTGGTGTTGTTCTGATGGAGTTGGTAACTGGGAAGAGGCCAATGGAGCCAGAGTTTGGAAACAATCATGACATTGTGCATTGGGTATGCAGCACTAACAGGAGCAAAGAAGAGGCTCTTGAATTGGTGGATCCTACTATTGCAGAACATTTCAAAGAGGATGCCATGAAGGTGTTGAGAATTGCATTACTGTGCACTGCCAAAATTCCAGCTTCAAGACCATCAATGAGAACGTTAGTTCATATGCTGGAAGAGGCAGATCCATGTACCCCAAACAAAATGATTGTGACCATTGATGCTTAA 2907 0.4279 MVAGSNFRYCSAPIIPTAALLFLCLVASSLGDELEPLMKFKSSIQSSNVTVFNSWAQASSPCLFTGIVCNSKGFVSEINLPEKQLEGTVPFDSLCELQSLEKISLGSNHLHGRISEGLMKCTNLKHLDLGVNSFNGEVPDLSSLYKLEFLNLNFSGISGEFPWKSLGNLTSLQFLSLGDNPLKEDPFPLEVLKLEKLYWLYLTNCSITGNIPLGIGNLTQLQNLELSDNHLYGEIPADIVKLRKLWQLELYDNYLSGKIPVGFGNLTSLVNFDASYNQLEGDLFEVRSLKNLASLHLFGNKLSGEIPKELGDLKNLTELSLYANNLTGPLPQKLGSWQGMQYVDVSDNFLSGPIPPFLCKNNQINELLLLNNSFNGTIPETYAKCTSLVRFRLSRNSLSGVVPSGIWGLPNLALFDLAMNQFEGPVTSDIAKAESLAQLLLSNNKFAGELPMEISEASSLVTIQLSSNQISGNIPENIGKLKKLTTLTLDGNNLSGVVPDSIGSCVSLNEINLAGNSLSGAIPGSIGSLPTLNSLNLSSNRLSGEIPSSLSSLRLSLLDLSNNQLFGSIPEPLSISAFKDGFMGNPGLCSQTLKGIRPCSMQSRSSRRLRNLLVCFLAAVMVLLGAFFLFTKLRQNKSEKPLKTTSWDVKQYHVLNFNESEIVNGIXAENLIGKGGSGNVYRVVLKGGAELAVKHIWTSNVSDRGSCRSTSTMLRRSSRSPEFDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGCLWDRLHTCKEKSKMGWEVRYDIALGAARGLEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKILSGGAGNWTNVIAGTLGYLPPEYAYTCKVTEKCDVYSFGVVLMELVTGKRPMEPEFGNNHDIVHWVCSTNRSKEEALELVDPTIAEHFKEDAMKVLRIALLCTAKIPASRPSMRTLVHMLEEADPCTPNKMIVTIDA 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2610g00020 968 FunFam Receptor-like protein kinase HAIKU2 649 757 - -
Vium2610g00020 968 SUPERFAMILY Protein kinase-like (PK-like) 652 952 IPR011009 -
Vium2610g00020 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Vium2610g00020 968 Gene3D Ribonuclease Inhibitor 187 285 IPR032675 -
Vium2610g00020 968 Gene3D Ribonuclease Inhibitor 32 186 IPR032675 -
Vium2610g00020 968 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Vium2610g00020 968 Gene3D Ribonuclease Inhibitor 286 357 IPR032675 -
Vium2610g00020 968 SMART serkin_6 666 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2610g00020 968 Gene3D Phosphorylase Kinase; domain 1 649 757 - -
Vium2610g00020 968 FunFam Receptor-like protein kinase HSL1 291 597 - -
Vium2610g00020 968 FunFam Probable inactive receptor kinase RLK902 30 188 - -
Vium2610g00020 968 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 24 951 - -
Vium2610g00020 968 SUPERFAMILY L domain-like 288 618 - -
Vium2610g00020 968 FunFam Leucine-rich receptor-like protein kinase family protein 189 285 - -
Vium2610g00020 968 Gene3D Ribonuclease Inhibitor 358 607 IPR032675 -
Vium2610g00020 968 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Vium2610g00020 968 SMART LRR_typ_2 481 504 IPR003591 -
Vium2610g00020 968 SMART LRR_typ_2 529 553 IPR003591 -
Vium2610g00020 968 SMART LRR_typ_2 289 312 IPR003591 -
Vium2610g00020 968 SMART LRR_typ_2 97 121 IPR003591 -
Vium2610g00020 968 SMART LRR_typ_2 169 194 IPR003591 -
Vium2610g00020 968 SMART LRR_typ_2 218 242 IPR003591 -
Vium2610g00020 968 SMART LRR_typ_2 313 337 IPR003591 -
Vium2610g00020 968 SUPERFAMILY RNI-like 77 399 - -
Vium2610g00020 968 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 758 966 - -
Vium2610g00020 968 Pfam Protein kinase domain 669 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2610g00020 968 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Vium2610g00020 968 ProSiteProfiles Protein kinase domain profile. 666 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2610g00020 968 Pfam Leucine rich repeat 507 565 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2610g00020 Vium-Chr2610 102381 105862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2610g00020 18 968 Receptor kinase-like Gene Family AT1G09970 56.413 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium2610g00020 Pkinase 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2610g00020 - - gmx:100811489 1592.02