Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2610g00002 ATGAAGCCTACCTTAAGAAATTATTATCCTCTTGTTTTCTTTGGGTCATTATTCTGTCTCTTTATGGCCAGATTTGGTGCTGAAAGTGACATTTATTGCTTGCAAACTATCAAGAACATGGACACTTCTGATCTCTTATCTAGCTGGGATTTCGAGAGCAACACCGAGCGTGGCATATGCAGATTCGGCGGTGTTGAATGCAGCAGCAACTATGTGGAAGATAGAGTAATCGGTATATGGCTATCTAACATGGGGCTGAAGGGTCAGTTTCCTCGTTGCATCGAGGATTTCATATGGTTGCAGACTCTGATCCTCTCACACAACGACCTTTCTGGATATATCCCAAACGATATATCAGCCAAGCTGCCATATCTGACCACACTTTATCTCTCAAATAACTATTTCTCTGGTGAAATTCCAAAGGGTATTGCCAATTTGTCAGGCTTAATTACCCTTCTACTTGATGGCAACCGGTTAACAGGCCAAATCCCACAAGATCTTGGGTTGCTTCCCAGGCTGAGAGATTTCAGTGTTGCAAATAACTTGTTGGAAGGGTCAGTGCCTGTTTTTGTGAACAATCTTAATGTGAGTTTGAGCTATGCAAATAATAGTGGACTCTGTGGGGGAATACTAGGAAACTGTGATGAGAGCTTGTTTGAATTCAAAAAGAGGAGGAGTAACGCTATTCATCCCCTAGTCAAGAAGCAGAACACTGAACAAGAAGCTGAATTGCTACCACTGGCCTTTCATGAGCAAGGAAGCAAAGAGCTATCAATATTGTTGGAGAGATTTATTTCTAGAATGAGCTTCAAGGAATTATGCAAGGCAACCGATTACTTTTGCATTGATAACGTGTTGGGGATAGGAAAGACAGGGATTATGTACAAGGCAAAGGTATCAAATAGTTGTATTCTGGCAGTTAAGAGACTGTATGATGCTGATAAGTACAAGTGGAAATTCTTACTTGAAATAATGATTCCGGGAAGACACAGGCACAGAAACATAGTTCTACCGCATGGATTCTGCATAGAGAAACATGAAAGGGTTTTGGTGTATGAGTACATCTCTAATGGAAGACTCAGTGATTGGTTACAATCTGACGAGGGACATCAACCAACAAAATTAGAATGGTCCGAGAGGATTCACATTGCACTTGGGATTGCAAGAGGTTTATCTTGGCTCCACAAAAGGTGCAACATAGTCCACCTCTATTTAGATTCGGAGTGTGTCTTGCTGGACAAGTACTTTGAGCCAAAAATTTCGAATTTTGGCAAGGCGAAATTCCTAAACCAGACTGTTGAAGATCATGTGAGGATGAAATTCTTTTTGGTTGATAGACTTGGAGTGAAGGGTTATGCTGAGAAGGATGTCTATGATTTTGGAATAATCCTTTTTGAACTTTTAACGGGGAAAAGACTAAGTCCATCCACTGATTCTTCTGACAGTATTAATTGCCATTTGATGAAGTATATCAGTAAGAACTTCTTCACTGATCCTGCTGACTTTTATGATGCCATTGACGATTCTATAATGGGGAAGGGTTTTGATGATAAAATCCTACGTCTTCTTGAAGTTGCATGTGACTGTGTTAAGACATCTCTAAAGCAAAGGCCAAAGATGGTTGACATTCACCAAACTATAAGAGCTATGTGGGAGGGCTACAAACCCTGCTTTCATTCTGAAAGTCTGACAGTAAAAATAAAATAA 1707 0.4025 MKPTLRNYYPLVFFGSLFCLFMARFGAESDIYCLQTIKNMDTSDLLSSWDFESNTERGICRFGGVECSSNYVEDRVIGIWLSNMGLKGQFPRCIEDFIWLQTLILSHNDLSGYIPNDISAKLPYLTTLYLSNNYFSGEIPKGIANLSGLITLLLDGNRLTGQIPQDLGLLPRLRDFSVANNLLEGSVPVFVNNLNVSLSYANNSGLCGGILGNCDESLFEFKKRRSNAIHPLVKKQNTEQEAELLPLAFHEQGSKELSILLERFISRMSFKELCKATDYFCIDNVLGIGKTGIMYKAKVSNSCILAVKRLYDADKYKWKFLLEIMIPGRHRHRNIVLPHGFCIEKHERVLVYEYISNGRLSDWLQSDEGHQPTKLEWSERIHIALGIARGLSWLHKRCNIVHLYLDSECVLLDKYFEPKISNFGKAKFLNQTVEDHVRMKFFLVDRLGVKGYAEKDVYDFGIILFELLTGKRLSPSTDSSDSINCHLMKYISKNFFTDPADFYDAIDDSIMGKGFDDKILRLLEVACDCVKTSLKQRPKMVDIHQTIRAMWEGYKPCFHSESLTVKIK 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2610g00002 568 FunFam Nuclear pore complex protein NUP107 28 188 - -
Vium2610g00002 568 Gene3D Phosphorylase Kinase; domain 1 246 354 - -
Vium2610g00002 568 Gene3D Transferase(Phosphotransferase) domain 1 355 557 - -
Vium2610g00002 568 ProSiteProfiles Protein kinase domain profile. 280 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2610g00002 568 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Vium2610g00002 568 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 79 194 - -
Vium2610g00002 568 Pfam Protein kinase domain 283 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2610g00002 568 SUPERFAMILY Protein kinase-like (PK-like) 256 554 IPR011009 -
Vium2610g00002 568 Gene3D Ribonuclease Inhibitor 32 214 IPR032675 -
Vium2610g00002 568 SUPERFAMILY L domain-like 57 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2610g00002 Vium-Chr2610 8954 11183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2610g00002 6 552 Receptor kinase-like Gene Family AT3G28450 32.313 6.62e-81 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vium2610g00002 Pkinase 3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2610g00002 - - vum:124831146 1164.44