Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium260g00003 ATGATCAAAGGACTTTATAGAGGAGCAACATCATCTTTTGTTGGGATGGCAGTAGAAGGATCACTATTTTTTGGTATTTATTCCCAGACAAAAATGTACCTTCAGGGGGGAGTTCAAAGTGGGGAACCACGGCCGCAAGTAATAATACCGTCTGCAGCTTATAGTGGTGCCATCATCAGTTTTGTGTTAGGTCCAACAGAGCTGATAAAGTGTAGGATGCAGATACAAGGCACCGACTCTTTGGTTCCCAAGTCCAGTAGATACAGTAGTCCCCTTGATTGTGCTCTTAAAACAGTAAAAACTGAAGGGGTGAAAGGAATTTTTCGTGGAGGTTGTACAACATTGCTTAGAGAATCTATAGGGAATGCTGTCTTTATGAGTGTCTACGAATATGTGCGTCATCAAATGCATTCAAATATCAAAGTTTCTTCATCCAATTACAGCAACCTGGTTGATATTGGAATCGGGATTGCTGCTGGAGGTCTTGGTGGTGTTGGTTTTTGGTTGACGGTTTTGCCTCTTGACGTGGCAAAGACTTTAATTCAGACAAACCCTGACAAAAACTGTCCAAGAAATCCTTTTCGGGTCTTGAGTTCAGTCTACCAAAGGGCTGGATTTAAGGGGTGCTATGCAGGTTTAGGTCCTACTATAAGTCGAGCATTTCCTGCTAATGCTGCAACAATTGTCGCGTGGGAGTTAGCATTGAAAATGCTAAGCATAAGGCGTGACTAA 732 0.4249 MIKGLYRGATSSFVGMAVEGSLFFGIYSQTKMYLQGGVQSGEPRPQVIIPSAAYSGAIISFVLGPTELIKCRMQIQGTDSLVPKSSRYSSPLDCALKTVKTEGVKGIFRGGCTTLLRESIGNAVFMSVYEYVRHQMHSNIKVSSSNYSNLVDIGIGIAAGGLGGVGFWLTVLPLDVAKTLIQTNPDKNCPRNPFRVLSSVYQRAGFKGCYAGLGPTISRAFPANAATIVAWELALKMLSIRRD 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium260g00003 243 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 3 238 - -
Vium260g00003 243 ProSiteProfiles Solute carrier (Solcar) repeat profile. 43 135 IPR018108 -
Vium260g00003 243 FunFam Mitochondrial amino acid carrier 118 242 - -
Vium260g00003 243 Pfam Mitochondrial carrier protein 157 238 IPR018108 -
Vium260g00003 243 Pfam Mitochondrial carrier protein 51 137 IPR018108 -
Vium260g00003 243 SUPERFAMILY Mitochondrial carrier 2 232 IPR023395 -
Vium260g00003 243 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 33 IPR018108 -
Vium260g00003 243 ProSiteProfiles Solute carrier (Solcar) repeat profile. 151 237 IPR018108 -
Vium260g00003 243 Gene3D Mitochondrial carrier domain 1 242 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium260g00003 Vium-Chr260 27445 33216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium260g00003 5 238 Antiporters AT1G79900 30.833 4.23e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium260g00003 K15109 - gmx:100815087 437.187