Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium260g00002 ATGGAGGAGATTTCAAGTTCAGGGTACAAGGAATATGTTGCTGGCTGTCTCGCTGGTGTTGCCGCTGTAGCCTCTGGCCACCCCTTTGACACCGTCAAGGTGATGCTGCAAAAGCACAATGCAGAAGCACATATGATTCAGTACAGAAATGGATTACATTGCACTGCTAGGATATTAAAGACAGAAGGAATCAAAGGACTTTATAGAGGAGCAACATCATCTTTTGTTGGGATGGCAGTAGAAGGATCACTATTTTTTGGTATTTATTCCCAGACAAAAATGTACCTTCAGGGGGGAGTTCAAAGTGGGGAACCACGGCCGCAAGTAATAATACCGTCTGCAGCTTATAGTGGTGCCATCATCAGTTTTGTGTTAGGTCCAACAGAGCTGATAAAGTGTAGGATGCAGATACAAGGCACCGACTCTTTGGTTCCCAAGTCCAGTAGATACAGTAGTCCCCTTGATTGTGCTCTTAAAACAGTAAAAACTGAAGGGGTGAAAGGAATTTTTCGTGGAGGTTGTACAACATTGCTTAGAGAATCTATAGGGAATGCTGTCTTTATGAGTGTCTACGAATATGTGCGTCATCAAATGCATTCAAATATCAAAGTTTCTTCATCCAATTACAGCAACCTGGTTGATATTGGAATCGGGATTGCTGCTGGAGGTCTTGGTGGTGTTGGTTTTTGGTTGACGGTTTTGCCTCTTGACGTGGCAAAGACTTTAATTCAGACAAACCCTGACAAAAACTGTCCAAGAAATCCTTTTCGGGTCTTGAGTTCAGTCTACCAAAGGGCTGGATTTAAGGGGTGCTATGCAGGTTTAGGTCCTACTATAAGTCGAGCATTTCCTGCTAATGCTGCAACAATTGTCGCGTGGGAGTTAGCATTGAAAATGCTAAGCATAAGGCGTGACTAA 918 0.4336 MEEISSSGYKEYVAGCLAGVAAVASGHPFDTVKVMLQKHNAEAHMIQYRNGLHCTARILKTEGIKGLYRGATSSFVGMAVEGSLFFGIYSQTKMYLQGGVQSGEPRPQVIIPSAAYSGAIISFVLGPTELIKCRMQIQGTDSLVPKSSRYSSPLDCALKTVKTEGVKGIFRGGCTTLLRESIGNAVFMSVYEYVRHQMHSNIKVSSSNYSNLVDIGIGIAAGGLGGVGFWLTVLPLDVAKTLIQTNPDKNCPRNPFRVLSSVYQRAGFKGCYAGLGPTISRAFPANAATIVAWELALKMLSIRRD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium260g00002 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 197 IPR018108 -
Vium260g00002 305 FunFam Mitochondrial arginine transporter BAC1 isoform A 11 304 - -
Vium260g00002 305 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 4 300 - -
Vium260g00002 305 SUPERFAMILY Mitochondrial carrier 9 294 IPR023395 -
Vium260g00002 305 Gene3D Mitochondrial carrier domain 10 304 IPR023395 -
Vium260g00002 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 6 95 IPR018108 -
Vium260g00002 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 299 IPR018108 -
Vium260g00002 305 Pfam Mitochondrial carrier protein 113 199 IPR018108 -
Vium260g00002 305 Pfam Mitochondrial carrier protein 9 97 IPR018108 -
Vium260g00002 305 Pfam Mitochondrial carrier protein 219 300 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium260g00002 Vium-Chr260 27445 33478 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium260g00002 2 300 Antiporters AT1G79900 30.492 5.36e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium260g00002 K15109 - gmx:100815087 540.421