Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium260g00001 ATGGACGCAAGCAGGTCTGAGGGAAAGAGAGTCTTGAGGTACAGCGAGGAGGAGGAAGATGAAGAAGAAGAAGAAGAGGAAGAGGCTGAGACGGTTTTTGGAGATGATGGAAGGAGGATTAAGAGAGTAATGAGAGATCTCTATGGAAAGAAAGGGTCGAAAGCTGGAGGCTCAATGCCACCTTCTTGTCAGGTGGATAACTGTGATGCTGATCTAAGTGAAGCTAAGCAGTATCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCATTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGATTCCATGAACTGTCTGAATTTGATGAATCGAAAAGGAGTTGTAGAACACGGTTGGTTGGTCATAACGAGAGGCGACGCAAAAATGCAGTTGACTATCGTGGAGATTAA 435 0.4575 MDASRSEGKRVLRYSEEEEDEEEEEEEEAETVFGDDGRRIKRVMRDLYGKKGSKAGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAHSVHMAGLQQRFCQQCSRFHELSEFDESKRSCRTRLVGHNERRRKNAVDYRGD 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium260g00001 144 MobiDBLite consensus disorder prediction 17 31 - -
Vium260g00001 144 MobiDBLite consensus disorder prediction 1 33 - -
Vium260g00001 144 MobiDBLite consensus disorder prediction 1 16 - -
Vium260g00001 144 FunFam Squamosa promoter-binding-like protein 14 54 124 - -
Vium260g00001 144 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 138 IPR044817 GO:0003677
Vium260g00001 144 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Vium260g00001 144 Coils Coil 12 32 - -
Vium260g00001 144 PIRSF SBP 1 144 IPR017238 GO:0003677|GO:0003700|GO:0009908
Vium260g00001 144 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Vium260g00001 144 Pfam SBP domain 63 136 IPR004333 GO:0003677
Vium260g00001 144 SUPERFAMILY SBT domain 61 141 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium260g00001 Vium-Chr260 6879 8937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium260g00001 43 138 SBP-box Gene Family AT1G53160 67.010 7.78e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium260g00001 SBP 3.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium260g00001 - - gmx:100527199 226.483