Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2607g00004 ATGAATACTGGTAGCGGTAACAGTAACGGTAACAGTAGTTCTGGTAACCCTTGTGGGGCTTGCAAGTTCCTCAGAAGGAAATGCATTCAGGGTTGTATCTTTGCTCCGTATTTTGATGCGGAGCAAGGTACAGCCCATTTCGCTTCTGTGCATAAGGTTTTTGGGGCTAGTAACGTGTCCAAGCTTCTCCTTAGCATTCCTGTGCACAAGAGGCTTGATGCTGTCATCACCATTTGTTATGAAGCACAATCACGCCTAAGAGATCCTGTTTACGGCTGTGTTTCCCACATCTTTGCCCTTCAGCAACAGGTGGTGAGCTTGCAAGCAGAACTCTCATACCTACAAGGCCACCTTGCCCAGATGGAGGGACCTCATCCACCACCACCTCCTCCATCTCAATCGGCGACGGCACTGCGATTCTCAATGGCTGATTTACCATCGGCGGCCACCGGAGCTGTGGCGCCGGCCACCACCTATGACTTGTCTTCACTTTTTGATACGTCGGGGCAAATTTCATGGGCCATGCAACAAAGGGCATTTGACCCACGTCAATACGTGGCAGCTCCTCCATCAAGTTCTACTAGGGCTAACGTGGAAGCAGTGGCACGTGACCTTCCTCGTAGGCATGGCTCTCCTCCATCACCTCCTGCATCAAGCTGCAACGCTTCACCATCTCTGTCTCTTTCCAAATGA 693 0.5108 MNTGSGNSNGNSSSGNPCGACKFLRRKCIQGCIFAPYFDAEQGTAHFASVHKVFGASNVSKLLLSIPVHKRLDAVITICYEAQSRLRDPVYGCVSHIFALQQQVVSLQAELSYLQGHLAQMEGPHPPPPPPSQSATALRFSMADLPSAATGAVAPATTYDLSSLFDTSGQISWAMQQRAFDPRQYVAAPPSSSTRANVEAVARDLPRRHGSPPSPPASSCNASPSLSLSK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2607g00004 230 MobiDBLite consensus disorder prediction 186 230 - -
Vium2607g00004 230 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
Vium2607g00004 230 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 136 - -
Vium2607g00004 230 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2607g00004 Vium-Chr2607 78237 81850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2607g00004 20 230 AS2 family AT2G45420 55.217 1.35e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium2607g00004 LOB 4.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2607g00004 K21994 - gmx:100777737 303.138