Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium259g00001 ATGGACGTGGACATACTCAAAACTTCCACGAGTGATACCAGCATGGACATGATCATGATGATGCAAATGGAAAAGTTCCCGGAGTTATGTGAGCCTTTTTATAACAACACCACTCCTCTCTACCCAGAAAACGAGTTCTTAAACTCCACCACCACCACACTGCCTGTGTTCTCCAACGTTAACCCAAACGTTATAACTCCACCCCCCACTTTGATCAATCCACCGCCACCACCTTCCTCTAATTTTGTTCTCCAACAACCCATGACACCTCCTCTACAACCCAACCCTTCGTTCTCGGAGAAGAAGAATTCCGTGGCGGCCATGAGGGAGATGATTTTCCGCGTAGCGGTGATGCAACCTATTCATATAGACCCTGAATCTATCAAGCCTCCCAAGAGAAGGAACGTGAAGATTTCGAAGGATCCGCAGAGTGTGGCAGCGAGGCACAGAAGGGAAAGGATTAGCGAGCGAATAAGGATCCTTCAGAGATTAGTCCCTGGTGGGACCAAAATGGACACGGCTTCTATGTTGGACGAAGCCATACACTACGTAAAGTTCTTGAAGAAACAAGTCCAGACGCTGGAACAAGCCGGAGCAAGTAGACCCTTGAGCGTTTTTGGCTTTCCTAGTACTGTGTCCAATGCCAATAATAACGTTAATTATTCCTCCTTCATGAAGAGTTGCCAACCGTGTCATATGCTGGGTTCTGCAGCTTCTAAACACATGCTGAGTTGA 735 0.4721 MDVDILKTSTSDTSMDMIMMMQMEKFPELCEPFYNNTTPLYPENEFLNSTTTTLPVFSNVNPNVITPPPTLINPPPPPSSNFVLQQPMTPPLQPNPSFSEKKNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRPLSVFGFPSTVSNANNNVNYSSFMKSCQPCHMLGSAASKHMLS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium259g00001 244 Pfam Helix-loop-helix DNA-binding domain 148 187 IPR011598 GO:0046983
Vium259g00001 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 197 IPR036638 GO:0046983
Vium259g00001 244 SMART finulus 144 193 IPR011598 GO:0046983
Vium259g00001 244 Gene3D - 137 202 IPR036638 GO:0046983
Vium259g00001 244 CDD bHLH_AtIND_like 139 195 - -
Vium259g00001 244 FunFam BHLH transcription factor 141 203 - -
Vium259g00001 244 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 63 231 IPR045843 GO:0003700|GO:0006355
Vium259g00001 244 Coils Coil 177 197 - -
Vium259g00001 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium259g00001 Vium-Chr259 4617 5801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium259g00001 11 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 60.938 6.02e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium259g00001 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium259g00001 - - gmx:100796649 350.903