Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2596g00006 ATGAGGTTTGAAACGCACCACATGAAGGCAAATACTGTCATTCGCCTCCTTCGTCCCTATCCCTGGCAATTATCTTCTTCTGTTGTTTCTGAAAAACAACAACATCGATTGATCCCAAGATCACCACCGGAACTTCACCGTAGCCAAGTCAAAACAGGGACCTTAAAAAACCTTTCCAACCGCACCGGCCACGCCCGCTTCGGGGGGGGGGCGAGTTGCACACGTTCCAAACCCCAACCCAGGCCCCCACCGCAACCAAAACCCAAACCAAAACTCAAGCCAACCTCAAACCCAACAAGGGTTCGTCACTGTGGGAATTTCTTAAAACCATCCATTTCAACTCTAAGCCCGCAACACAAGAGAAAAACTCTACCTCAATCTCCCCAAACCACCACCACATCCGCGTTCACTTTTGATACCTTCGTCACCAACGACGCCAGGCGTCTCCGACGGAACAGATCGTGTTCACTTTACTCCCTCCCTCACGCACGCAAAAACCTCTATTCCTCATTGCCCACCGGAAATACAAAGTGCCGGCGACGCCCGCGCACTCCGCCAAAACCTCCTGCCCATGTCCAAGAAAAGGACAAATCCGACGCGCGTGTTGAAACTAATCCATCAGAGGTCCGGCGATTAAGTCCAAGATCGCCGACCTCCCGGGCCGGCCGAGTGATACAGACACGTGGGTACTACAAGTGCAGCACCGTCAAAGGGTGTCCGGCGAGGAAGCACGTGGAGCGCGCGCAAGATGACCCGAAGATGCTGATAGTGACGTACGAGGGCGAGCACCGTCACGCGCTTCCGTTGCCTGCCGCTACCGGCGGTGGTTTCGGGCTTTGA 840 0.5452 MRFETHHMKANTVIRLLRPYPWQLSSSVVSEKQQHRLIPRSPPELHRSQVKTGTLKNLSNRTGHARFGGGASCTRSKPQPRPPPQPKPKPKLKPTSNPTRVRHCGNFLKPSISTLSPQHKRKTLPQSPQTTTTSAFTFDTFVTNDARRLRRNRSCSLYSLPHARKNLYSSLPTGNTKCRRRPRTPPKPPAHVQEKDKSDARVETNPSEVRRLSPRSPTSRAGRVIQTRGYYKCSTVKGCPARKHVERAQDDPKMLIVTYEGEHRHALPLPAATGGGFGL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2596g00006 279 MobiDBLite consensus disorder prediction 77 93 - -
Vium2596g00006 279 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 228 268 IPR044810 GO:0003700
Vium2596g00006 279 MobiDBLite consensus disorder prediction 47 61 - -
Vium2596g00006 279 SUPERFAMILY WRKY DNA-binding domain 227 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2596g00006 279 MobiDBLite consensus disorder prediction 31 131 - -
Vium2596g00006 279 Pfam WRKY DNA -binding domain 227 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2596g00006 279 ProSiteProfiles WRKY domain profile. 228 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2596g00006 279 SMART WRKY_cls 227 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium2596g00006 279 MobiDBLite consensus disorder prediction 166 222 - -
Vium2596g00006 279 MobiDBLite consensus disorder prediction 187 208 - -
Vium2596g00006 279 Gene3D WRKY domain 169 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium2596g00006 279 MobiDBLite consensus disorder prediction 109 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2596g00006 Vium-Chr2596 40975 42219 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2596g00006 228 265 WRKY Transcription Factor Family AT2G24570 86.842 3.77e-17 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium2596g00006 WRKY 1.3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2596g00006 - - vum:124831060 516.153