Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2592g00002 ATGAGAGTGTTGTGGAAGATGAACAGAAGCATGACCTGGAATCCCTGCAAGTTCTTCTTCCTTTGTATTATCATTTTCCATCTCGCAGTTGGTAAAGCAAAGGGCGCCGACGCTGCTTATCATAGAGTTTGCAGTGAAGAAAAGAGCAGTGACAACAGCACCTATCAGGCGAATCTGAGGACCCTCCTCTCTTCCTTATCTTCCAACGCTACAGCCAACGCCAACGGATTCTACAACAACACAATCCTTGGCACAAACTCCTCTGATACAGTATATGGTCTTTTCATGTGCAGGGGTGATCTTCTCTCTCACGCCTGCAAAGATTGCGTTGCAAACGCAACCCAGACTCTGTCTTCAGACACAGACTGTTCCCTGTCCAAATCGAGTGTGATTTGGTACGACGAATGCATGGTTCGGTATTCCGACCGCTCTTTCTTCTCAGCTGTGAACACATCTCCCGGATATTACGTGTGGAACGTGGCCAATATCTCCTCCGACCCATCAAGCTTCAGGAGTTTACTGGAAGACACCATGAAACAAACTGCACGTGAAGCAGCCAATTCTAGAAACAAGTATTACACAAACAATGGAACCTTACCGAAACTTCAGACTCTTTACTGTCTAACTCAGTGCACACAAGACCTTTCACTCCAACAATGCTCAGACTGCCTTGATGAAGCAATATCAAATATTCCAACATGCTGTAACGGAAAGCAAGGAGGAAGAGTTCTGTTTCCCAGTTGTAACATCAGGTATGAATTGTACCCTTTCTATCGCGTCACCGATGAGGCACCTAAAGGACTCGTCCCAGAAACAAATTATGCAAACAGAGATTCTGAATATTCAGAAGATCCTGGCTATATTTCTCACAACTGCTCAAACAACAAACTTGACGCTGATTTCCAATCAAACCTCCGAACCCTCCTCTTTCACTTGTCTTCCAACGCCATCTCTAAACCTGGATTCCAGACTCAAGAGGGAACAGTATATGGCCTCTTCAGGTGCCGTATCGACATTGCTGCTCGCCTCTGTGAACAATGCATCAAAAACGCAACGGACAGAATAACCTCCGACTGTGGGTTGGCTTCTGCCGAGGCTGTAATATGGTACAATCACTGCTGGCTTCGCTATTCCAACATAAATTTCTTCTCCACCGCCGAAACAAATCCGAGATTTTACAATCTGAATATCAGCAACAGCAGTCCGATACAGTCCTCCGTTGCTTCTGATTTATCAAACAAGTTAGCTAAGGTGGCCACAATGACTGGGAACACTGATAACAAATTCGAAACAGATGAATCTCTGAGATTGAACGATAAGCAAACAGTGTACATTCTTGCTCAGTGCTCATCGGATCTATCAACCAATAGTTGCATTGGGTGCCTCAATGATGTGATTGGAACAACAATTCCATGGAGCAGTTTGGGAAGCGTGGGTGGACGGGTTCTGTATCCGAGCTGTATTCTTCGCTTTGAATTGTTCAAGTTTTACAATCTCGCGCCATCTGCTCCTCCTCCCCCACCAGGTGAAAATCACTCAAGAATTATCTTGATCATTACTTCTAGCATAGTTGCATCAGGAATACTTTTCATCTTTTGTTATTATTTGATACGAAGAAAGAACAGAAAAAACAATAGAACTATTCTTCAAGAAAATTTTGGACAAGAAAGTTCAACTATAGAATCTTTGCAATTCAATCTACCAATAATTGAAGCAGCAACAAGTAACTTCTCACATGACAACAAAATTGGAAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTTATGATGGACGATCCATTGCTGTAAAGAGACTTTCAAGAAATTCTAGACAAGGCATACAAGAGTTTAAAAACGAGGTTCTATTAATAGCCAAACTTCAACATAGAAATTTGGTGGCTTTCATAGGATTTTGTCTTGATGAACAAGAAAAAATACTTATATATGAATATGTGCCAAACAAAAGTCTAGACTACTTCTTATTTGATACTAAACAAGAAAAAATTTTAAGTTGGAGTGAGCGTCACAAAATCATAGCTGGCATTGCTCGAGGAATTGTATATTTACATGAACATTCTCGACTTAAAGTTATACATCGTGACCTTAAACCGAGTAATGTACTATTAGATGAAAATATGAATCCCAAAATTTCAGATTTTGGACTTGCTAGAATTGTTGAAATAGATCAAGAAGAGGAAAGTACAAATAGAATTATTGGAACATATGGCTATATGTCTCCAGAGTATGCTATGTTGGGACAATTTTCTGAGAAATCTGATGTTTACAGTTTTGGTGTTATGATTCTCGAGATTATAAGTGGAAAAAAGAATATAAGTTCAAATGAATCGCATCGTGTTGCTGATGGTCTTCTAAAGTTTGTTTGGAGACATTGGAGGGATGAAACAATATTAAGTGCATTGGACCCAAAATTAGAAGAAAATTATTCTAAGATTGAATTCATGAGATGCGTTCAGATTGGTCTATTATGTGTTCAGGAAGATCCAGAGGCTAGACCTACAATGATAGCAATTGTTTCATATTTTAGTAGTCAAACAATTGAGTTGCCATCTCCCCAAGAACCAACATTTTTCTTGAACCACAAAATAAATCCAATTATATCACTTGAATCGAGTTCAGGCCAAGATAGTTCCATACCATCTTCTACCAATACAATATCCATAAGTGAATTTTATCCTCGATAG 2706 0.3984 MRVLWKMNRSMTWNPCKFFFLCIIIFHLAVGKAKGADAAYHRVCSEEKSSDNSTYQANLRTLLSSLSSNATANANGFYNNTILGTNSSDTVYGLFMCRGDLLSHACKDCVANATQTLSSDTDCSLSKSSVIWYDECMVRYSDRSFFSAVNTSPGYYVWNVANISSDPSSFRSLLEDTMKQTAREAANSRNKYYTNNGTLPKLQTLYCLTQCTQDLSLQQCSDCLDEAISNIPTCCNGKQGGRVLFPSCNIRYELYPFYRVTDEAPKGLVPETNYANRDSEYSEDPGYISHNCSNNKLDADFQSNLRTLLFHLSSNAISKPGFQTQEGTVYGLFRCRIDIAARLCEQCIKNATDRITSDCGLASAEAVIWYNHCWLRYSNINFFSTAETNPRFYNLNISNSSPIQSSVASDLSNKLAKVATMTGNTDNKFETDESLRLNDKQTVYILAQCSSDLSTNSCIGCLNDVIGTTIPWSSLGSVGGRVLYPSCILRFELFKFYNLAPSAPPPPPGENHSRIILIITSSIVASGILFIFCYYLIRRKNRKNNRTILQENFGQESSTIESLQFNLPIIEAATSNFSHDNKIGKGGFGEVYKGILYDGRSIAVKRLSRNSRQGIQEFKNEVLLIAKLQHRNLVAFIGFCLDEQEKILIYEYVPNKSLDYFLFDTKQEKILSWSERHKIIAGIARGIVYLHEHSRLKVIHRDLKPSNVLLDENMNPKISDFGLARIVEIDQEEESTNRIIGTYGYMSPEYAMLGQFSEKSDVYSFGVMILEIISGKKNISSNESHRVADGLLKFVWRHWRDETILSALDPKLEENYSKIEFMRCVQIGLLCVQEDPEARPTMIAIVSYFSSQTIELPSPQEPTFFLNHKINPIISLESSSGQDSSIPSSTNTISISEFYPR 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2592g00002 901 SUPERFAMILY Protein kinase-like (PK-like) 560 881 IPR011009 -
Vium2592g00002 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Vium2592g00002 901 SMART serkin_6 577 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2592g00002 901 Gene3D Transferase(Phosphotransferase) domain 1 653 857 - -
Vium2592g00002 901 Gene3D - 36 145 IPR038408 -
Vium2592g00002 901 Gene3D - 152 257 IPR038408 -
Vium2592g00002 901 Gene3D - 389 496 IPR038408 -
Vium2592g00002 901 Gene3D - 285 382 IPR038408 -
Vium2592g00002 901 ProSiteProfiles Gnk2-homologous domain profile. 283 382 IPR002902 -
Vium2592g00002 901 ProSiteProfiles Gnk2-homologous domain profile. 388 496 IPR002902 -
Vium2592g00002 901 ProSiteProfiles Gnk2-homologous domain profile. 37 145 IPR002902 -
Vium2592g00002 901 ProSiteProfiles Protein kinase domain profile. 577 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2592g00002 901 FunFam Cysteine-rich receptor-like protein kinase 25 153 257 - -
Vium2592g00002 901 CDD STKc_IRAK 583 849 - -
Vium2592g00002 901 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 179 895 - -
Vium2592g00002 901 FunFam cysteine-rich receptor-like protein kinase 10 653 856 - -
Vium2592g00002 901 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 38 144 - -
Vium2592g00002 901 Pfam Salt stress response/antifungal 44 142 IPR002902 -
Vium2592g00002 901 Pfam Salt stress response/antifungal 292 379 IPR002902 -
Vium2592g00002 901 Pfam Salt stress response/antifungal 410 492 IPR002902 -
Vium2592g00002 901 Pfam Salt stress response/antifungal 165 255 IPR002902 -
Vium2592g00002 901 Pfam Protein kinase domain 578 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2592g00002 901 ProSiteProfiles Gnk2-homologous domain profile. 151 257 IPR002902 -
Vium2592g00002 901 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 538 652 - -
Vium2592g00002 901 Gene3D Phosphorylase Kinase; domain 1 537 652 - -
Vium2592g00002 901 ProSitePatterns Protein kinases ATP-binding region signature. 583 605 IPR017441 GO:0005524
Vium2592g00002 901 MobiDBLite consensus disorder prediction 878 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2592g00002 Vium-Chr2592 16478 20713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2592g00002 282 901 Receptor kinase-like Gene Family AT4G05200 42.705 8.90e-167 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium2592g00002 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2592g00002 - - pvu:PHAVU_008G077500g 1382.08